Wing phosphorylation is a major functional determinant of the Lrs14-type biofilm and motility regulator AbfR1 in Sulfolobus acidocaldarius.

Li L, Banerjee A Bischof LF, Maklad HR, Hoffmann L, Henche AL, Veliz F, Bildl W, Schulte U, Orell A, Essen LO, Peeters E, Albers SV, Mol Microbiol 105(5):777-793 (2017) Europe PMC

SASDBJ2 – Wild-type archaeal biofilm regulator 1 (ABfR1) bound to 40bp dsDNA-Sa oligonucleotide.

40bp long dsDNA-Sa Oligonucleotide
Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family).
MWI(0) 48 kDa
MWexpected 51 kDa
log I(s) 4.79×101 4.79×100 4.79×10-1 4.79×10-2
40bp long dsDNA-Sa Oligonucleotide Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). small angle scattering data  s, nm-1
ln I(s)
40bp long dsDNA-Sa Oligonucleotide Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). Guinier plot ln 4.79×101 Rg: 3 nm 0 (3 nm)-2 s2
(sRg)2I(s)/I(0)
40bp long dsDNA-Sa Oligonucleotide Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). Kratky plot 1.104 0 3 sRg
p(r)
40bp long dsDNA-Sa Oligonucleotide Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). pair distance distribution function Rg: 3.4 nm 0 Dmax: 11.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
40bp long dsDNA-Sa Oligonucleotide Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). DAMMIN model

X-ray synchrotron radiation scattering data from solutions of N terminal affinity tag cleaved (by thrombin) wild type AbfR1 in complex with SaOligo in 0.5 x TBE buffer was collected on the BM29 beam line on the storage ring ESRF (Grenoble, France) using a 2D Photon counting Pilatus 1M pixel detector (s = 4π sin θ/λ, where 2θ is the scattering angle). A single concentration of 3.5mg/ mL was measured in 10 successive 20 second frames. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted .The analysis was performed using the ATSAS package. The displayed model is the best fit model with the lowest reduced Chi-squared value (1.55) after imposing P2 symmetry. The DNA is considerably bent in complex with ABfR1.

40bp long dsDNA-Sa Oligonucleotide (dsDNA-Sa Oligo)
Mol. type   DNA
Olig. state   Monomer
Mon. MW   24.7 kDa
Sequence   FASTA
 
Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). (ABfR1-WT)
Mol. type   Protein
Organism   Sulfolobus acidocaldarius
Olig. state   Dimer
Mon. MW   13.2 kDa
 
UniProt   Q4JBH1 (1-116)
Sequence   FASTA