Three-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states.

Cantero-Camacho Á, Fan L, Wang YX, Gallego J, RNA 23(9):1465-1476 (2017) Europe PMC

SASDBQ7 – Domain 3'X of hepatitis C virus RNA at higher ionic strength

Domain 3'X of hepatitis C virus
MWexperimental 82 kDa
MWexpected 63 kDa
log I(s) 8.96×101 8.96×100 8.96×10-1 8.96×10-2
Domain 3'X of hepatitis C virus small angle scattering data  s, nm-1
ln I(s)
Domain 3'X of hepatitis C virus Guinier plot ln 8.97×101 Rg: 6.0 nm 0 (6.0 nm)-2 s2
(sRg)2I(s)/I(0)
Domain 3'X of hepatitis C virus Kratky plot 1.104 0 3 sRg
p(r)
Domain 3'X of hepatitis C virus pair distance distribution function Rg: 6.5 nm 0 Dmax: 24.4 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Domain 3'X of hepatitis C virus DAMMIN model

SAXS data from solutions of Domain 3'X of hepatitis C virus RNA at higher ionic strength in 10mM Tris 0.1 mM EDTA 2 mM MgCl2 50 mM NaCl, pH 7, were collected on an in-house Rigaku BIOSAXS-2000 instrument (Frederick, USA) using a Pilatus 100K detector at a sample-detector distance of 0.5 m and at a wavelength of λ = 0.154 nm (I(s) vs s, where s = 4π sin θ/λ and 2θ is the scattering angle). Solute concentrations ranging between 0.4 and 1.5 mg/ml were measured at 27°C. 30 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for RNA concentration. The low angle data collected at lower concentrations were extrapolated to infinite dilution and merged with the higher concentration data to yield the final composite scattering curve.

Domain 3'X of hepatitis C virus (3'X)
Mol. type   RNA
Organism   Hepatitis C virus
Olig. state   Dimer
Mon. MW   31.7 kDa
Sequence   FASTA