A structural and biochemical comparison of Ribonuclease E homologues from pathogenic bacteria highlights species-specific properties

Mardle C, Shakespeare T, Butt L, Goddard L, Gowers D, Atkins H, Vincent H, Callaghan A, Scientific Reports 9(1) (2019) DOI

SASDE92 – Ribonuclease E from Acinetobacter baumannii

Endoribonuclease E
MWexperimental 298 kDa
MWexpected 254 kDa
VPorod 508 nm3
log I(s) 1.89×10-2 1.89×10-3 1.89×10-4 1.89×10-5
Endoribonuclease E small angle scattering data  s, nm-1
ln I(s)
Endoribonuclease E Guinier plot ln 1.89×10-2 Rg: 5.2 nm 0 (5.2 nm)-2 s2
(sRg)2I(s)/I(0)
Endoribonuclease E Kratky plot 1.104 0 3 sRg
p(r)
Endoribonuclease E pair distance distribution function Rg: 5.1 nm 0 Dmax: 18.3 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of Ribonuclease E from Acinetobacter baumannii in 10 mM DTT, 10 mM MgCl2, 0.5 M NaCl, 20 mM Tris, pH 8 were collected on the B21 beam line at the Diamond Light Source (Oxfordshire, UK) using a Pilatus 2M detector at a sample-detector distance of 4.0 m and at a wavelength of λ = 0.1 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 5.52 mg/ml was measured at 15°C. 640 successive 3 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Endoribonuclease E (RNase E)
Mol. type   Protein
Organism   Acinetobacter baumannii
Olig. state   Tetramer
Mon. MW   63.4 kDa
 
UniProt   A0A0B9WR03 (1 - 544)
Sequence   FASTA