Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification

Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J, Journal of Structural Biology: X :100043 (2020) DOI

SASDJB9 – LIM/homeobox protein Lhx3 homeodomain (Lhx3-HD): HD3

LIM/homeobox protein Lhx3
MWI(0) 12 kDa
MWexpected 10 kDa
VPorod 18 nm3
log I(s) 1.65×10-3 1.65×10-4 1.65×10-5 1.65×10-6
LIM/homeobox protein Lhx3 small angle scattering data  s, nm-1
ln I(s)
LIM/homeobox protein Lhx3 Guinier plot ln 1.66×10-3 Rg: 2.1 nm 0 (2.1 nm)-2 s2
(sRg)2I(s)/I(0)
LIM/homeobox protein Lhx3 Kratky plot 1.104 0 √3 sRg
p(r)
LIM/homeobox protein Lhx3 pair distance distribution function Rg: 2.1 nm 0 Dmax: 7 nm

Data validation

Fits and models

log I(s)
 s, nm-1
LIM/homeobox protein Lhx3 MONSA model
log I(s)
 s, nm-1
LIM/homeobox protein Lhx3 DAMMIN model
Synchrotron SAXS data from solutions of HD3 (Lhx3-HD) in 20 mM sodium phosphate buffer, 100 mM NaCl, 1 mM DTT, pH 7.4 were collected on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus 1M detector at a sample-detector distance of 0.9 m and at a wavelength of λ = 0.108 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 0.17 mg/ml was measured at 27°C. 32 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Storage temperature = UNKNOWN

LIM/homeobox protein Lhx3 (Lhx3)
Mol. type   Protein
Organism   Mus musculus
Olig. state   Monomer
Mon. MW   9.6 kDa
 
UniProt   P50481 (148-227)
Sequence   FASTA