Glutamate 270 plays an essential role in K(+)-activation and domain closure of Thermus thermophilus isopropylmalate dehydrogenase.

Gráczer É, Palló A, Oláh J, Szimler T, Konarev PV, Svergun DI, Merli A, Závodszky P, Weiss MS, Vas M, FEBS Lett 589(2):240-5 (2015) Europe PMC

SASDL57 – Thermus thermophilus 3-isopropylmalate dehydrogenase

3-isopropylmalate dehydrogenase
MWI(0) 72 kDa
MWexpected 73 kDa
log I(s) 1.39×103 1.39×102 1.39×101 1.39×100
3-isopropylmalate dehydrogenase small angle scattering data  s, nm-1
ln I(s)
3-isopropylmalate dehydrogenase Guinier plot ln 1.40×103 Rg: 2.8 nm 0 (2.8 nm)-2 s2
(sRg)2I(s)/I(0)
3-isopropylmalate dehydrogenase Kratky plot 1.104 0 3 sRg

Data validation


Fits and models


log I(s)
 s, nm-1
3-isopropylmalate dehydrogenase PDB (PROTEIN DATA BANK) model
3-isopropylmalate dehydrogenase PDB (PROTEIN DATA BANK) model

Synchrotron SAXS data from solutions of Thermus thermophilus 3-isopropylmalate dehydrogenase in 25 mM MOPS/NaOH, pH 7.6 were collected on the EMBL P12 beam line at the PETRA III storage ring (DESY; Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 3.1 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 10.00 mg/ml was measured at 10°C. 20 successive 0.050 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The OLIGOMER analysis through a concentration series is made available in the full entry zip archive comparing the wild-type and E270A mutant state(s) in the absence and presence of KCl in solution.

3-isopropylmalate dehydrogenase (Tt-IPMDH)
Mol. type   Protein
Organism   Thermus thermophilus
Olig. state   Dimer
Mon. MW   36.7 kDa
 
UniProt   P61495 (1-345)
Sequence   FASTA
 
PDB ID   2Y3Z
 
PDB ID   4F7I