Structure of the lantibiotic dehydratase MadB

Jens Reiners.

SASDRY6 – lantibiotic dehydratase MadB bound to truncated maddinglicin with a full leader peptide (Leader3)

Thiopeptide-type bacteriocin biosynthesis domain containing protein
Lantibiotic, gallidermin/nisin family
MWexperimental 261 kDa
MWexpected 253 kDa
VPorod 445 nm3
log I(s) 2.62×102 2.62×101 2.62×100 2.62×10-1
Thiopeptide-type bacteriocin biosynthesis domain containing protein Lantibiotic, gallidermin/nisin family small angle scattering data  s, nm-1
ln I(s)
Thiopeptide-type bacteriocin biosynthesis domain containing protein Lantibiotic, gallidermin/nisin family Guinier plot ln 2.63×102 Rg: 4.5 nm 0 (4.5 nm)-2 s2
(sRg)2I(s)/I(0)
Thiopeptide-type bacteriocin biosynthesis domain containing protein Lantibiotic, gallidermin/nisin family Kratky plot 1.104 0 3 sRg
p(r)
Thiopeptide-type bacteriocin biosynthesis domain containing protein Lantibiotic, gallidermin/nisin family pair distance distribution function Rg: 4.4 nm 0 Dmax: 13.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Thiopeptide-type bacteriocin biosynthesis domain containing protein Lantibiotic, gallidermin/nisin family GASBOR model

Synchrotron SAXS data from solutions of lantibiotic dehydratase MadB bound to truncated maddinglicin in 50 mM HEPES, 200 mM NaCl, 1 % (v/v) glycerol, pH 8 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus3 2M detector at a sample-detector distance of 2.8 m and at a wavelength of λ = 0.099 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 10 mg/ml was injected at a 0.08 ml/min flow rate onto a GE Superdex 200 Increase 3.2/300 column at 10°C. 1200 successive 2 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

MadB (10.00 mg/ml) incubated with Leader3 (400 µM)

Thiopeptide-type bacteriocin biosynthesis domain containing protein (MadB)
Mol. type   Protein
Organism   Clostridium sp. Maddingley MBC34-26
Olig. state   Dimer
Mon. MW   124.9 kDa
 
UniProt   K6TUQ9 (1-1038)
Sequence   FASTA
 
Lantibiotic, gallidermin/nisin family (MadA)
Mol. type   Protein
Organism   Clostridium sp. Maddingley MBC34-26
Olig. state   Monomer
Mon. MW   3.5 kDa
 
UniProt   K6SWQ2 (1-33)
Sequence   FASTA