Antibody binding geometry and affinity control inhibitory FcγRIIB receptor signaling

Hayden Fisher.

SASDU87 – Deglycosylated Fc gamma receptor IIb (CD32b) extracellular domain in complex with human IgG1 5C05 F(ab')

Low affinity immunoglobulin gamma Fc region receptor II-b
Human IgG1 F(ab') 5C05
MWexperimental 60 kDa
MWexpected 67 kDa
VPorod 95 nm3
log I(s) 3.16×101 3.16×100 3.16×10-1 3.16×10-2
Low affinity immunoglobulin gamma Fc region receptor II-b Human IgG1 F(ab') 5C05 small angle scattering data  s, nm-1
ln I(s)
Low affinity immunoglobulin gamma Fc region receptor II-b Human IgG1 F(ab') 5C05 Guinier plot ln 3.17×101 Rg: 3.5 nm 0 (3.5 nm)-2 s2
(sRg)2I(s)/I(0)
Low affinity immunoglobulin gamma Fc region receptor II-b Human IgG1 F(ab') 5C05 Kratky plot 1.104 0 3 sRg
Dmax: 14 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Low affinity immunoglobulin gamma Fc region receptor II-b Human IgG1 F(ab') 5C05 MOLECULAR DYNAMICS FRAME model

Synchrotron SAXS data from solutions of deglycosylated Fc gamma receptor IIb (CD32b) extracellular domain in complex with human IgG1 5C05 F(ab') in 50 mM HEPES, 150 mM KCl, pH 7.5 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.099 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 45.00 μl sample at 8 mg/ml was injected at a 0.25 ml/min flow rate onto a GE Superdex 200 10/300 column at 20°C. 600 successive 2 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Low affinity immunoglobulin gamma Fc region receptor II-b (CD32b)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   20.4 kDa
 
UniProt   P31994 (43-217)
Sequence   FASTA
 
Human IgG1 F(ab') 5C05 (5C05 F(ab'))
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   46.1 kDa
Sequence   FASTA