Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics.

Gómez-Velasco H, García-Ramírez B, Siliqi D, Graewert MA, Quintero-Martinez A, Ortega E, Rodríguez-Romero A, Int J Biol Macromol :147658 (2025) Europe PMC

SASDVG9 – Mouse murine Immunoglobulin E (IgE) antibodies

Murine Immunoglobulin E (IgE) antibodies
MWexperimental 190 kDa
MWexpected 165 kDa
VPorod 422 nm3
log I(s) 2.00×10-1 2.00×10-2 2.00×10-3 2.00×10-4
Murine Immunoglobulin E (IgE) antibodies small angle scattering data  s, nm-1
ln I(s)
Murine Immunoglobulin E (IgE) antibodies Guinier plot ln 2.01×10-1 Rg: 5.5 nm 0 (5.5 nm)-2 s2
(sRg)2I(s)/I(0)
Murine Immunoglobulin E (IgE) antibodies Kratky plot 1.104 0 3 sRg
p(r)
Murine Immunoglobulin E (IgE) antibodies pair distance distribution function Rg: 5.5 nm 0 Dmax: 19.2 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Murine Immunoglobulin E (IgE) antibodies DAMMIN model

Synchrotron SAXS data from solutions of Mouse murine Immunoglobulin E (IgE) antibodies in 20 mM Tris, 50 mM NaCl, pH 8.4 were collected on the B21 beam line at the Diamond Light Source storage ring (Didcot, UK) using a Eiger 4M detector at a sample-detector distance of 3.7 m and at a wavelength of λ = 0.094 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 6.4 mg/ml was injected at a 0.07 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 15°C. 620 successive 3 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Synchrotron SAXS data from solutions of murine IgE in 20 mM Tris, 50 mM NaCl, pH 8.4 were collected on the B21 beamline at Diamond (Didcot, UK) using an EigerX 4M-Detrics detector at a sample-detector distance of 3.7 m and the wavelength of 0.95 A. In-line size-exclusion chromatography (SEC) SAXS was employed. The SEC parameters were as follows: A 50.00 μl sample at 6.4 mg/ml was injected at a 0.075 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 15°C and 620 successive 3-second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The molecular weight of a murine IgE, considering glycosylation, is approximately 190-198 kDa (protein 180 kDa + 10-18 kDa glycosylation). This estimate is an approximation; the actual molecular weight can vary depending on the specific glycosylation patterns and modifications of the IgE molecule.

Murine Immunoglobulin E (IgE) antibodies (IgE)
Mol. type   Protein
Organism   Mus musculus
Olig. state   Monomer
Mon. MW   165.4 kDa
Sequence   FASTA