A domain-swapped CaMKII conformation facilitates linker-mediated allosteric regulation

Bao Nguyen Viet.

SASDVU7 – Ca2+/calmodulin-dependent protein kinase II (CaMKII) holoenzyme with Exon 14 as the linker region

Calcium/calmodulin-dependent protein kinase type II subunit alpha (Δ1-6; Q223K; Δ329-344)
MWexperimental 630 kDa
MWexpected 620 kDa
VPorod 1437 nm3
log I(s) 5.29×103 5.29×102 5.29×101 5.29×100
Calcium/calmodulin-dependent protein kinase type II subunit alpha (Δ1-6; Q223K; Δ329-344) small angle scattering data  s, nm-1
ln I(s)
Calcium/calmodulin-dependent protein kinase type II subunit alpha (Δ1-6; Q223K; Δ329-344) Guinier plot ln 5.29×103 Rg: 6.8 nm 0 (6.8 nm)-2 s2
(sRg)2I(s)/I(0)
Calcium/calmodulin-dependent protein kinase type II subunit alpha (Δ1-6; Q223K; Δ329-344) Kratky plot 1.104 0 3 sRg
p(r)
Calcium/calmodulin-dependent protein kinase type II subunit alpha (Δ1-6; Q223K; Δ329-344) pair distance distribution function Rg: 7.1 nm 0 Dmax: 25.7 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Calcium/calmodulin-dependent protein kinase type II subunit alpha (Δ1-6; Q223K; Δ329-344) GASBOR model

Synchrotron SAXS data from solutions of Ca2+/calmodulin-dependent protein kinase II (CaMKII) holoenzyme with Exon 14 as the linker region in 25 mM tris-HCl pH 8.8, 250 mM KCl, 1 mM TCEP, 2% glycerol were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; Berkeley, CA, USA) using a Pilatus3 X 2M detector at a sample-detector distance of 2.1 m and at a wavelength of λ = 0.1127 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 55.00 μl sample at 6 mg/ml was injected at a 0.65 ml/min flow rate onto a Shodex KW-800 series column at 7°C. 600 successive 3 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Calcium/calmodulin-dependent protein kinase type II subunit alpha (Δ1-6; Q223K; Δ329-344) (CaMKII Exon 14)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Dodecamer
Mon. MW   51.7 kDa
 
UniProt   Q9UQM7 (7-478)
Sequence   FASTA