Peroxisome proliferator-activated receptors gamma (PPARγ) and alpha (PPARα)

Cy M Jeffries.

SASDW24 – The N-terminal AB domain and DNA binding domain of peroxisome proliferator-activated receptor alpha (PPARα-ABDBD)

Peroxisome proliferator-activated receptor alpha
MWexperimental 23 kDa
MWexpected 20 kDa
VPorod 37 nm3
log I(s) 1.28×10-2 1.28×10-3 1.28×10-4 1.28×10-5
Peroxisome proliferator-activated receptor alpha small angle scattering data  s, nm-1
ln I(s)
Peroxisome proliferator-activated receptor alpha Guinier plot ln 1.28×10-2 Rg: 2.4 nm 0 (2.4 nm)-2 s2
(sRg)2I(s)/I(0)
Peroxisome proliferator-activated receptor alpha Kratky plot 1.104 0 3 sRg
p(r)
Peroxisome proliferator-activated receptor alpha pair distance distribution function Rg: 2.6 nm 0 Dmax: 10.3 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of PPARα-ABDBD in 25 mM HEPES, 150 mM NaCl, 5 mM NaNO₃, 5 mM TCEP, pH 7.4 were collected on the EMBL P12 beam line at PETRA III (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.123972 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 55.00 μl sample at 9 mg/ml was injected at a 0.70 ml/min flow rate onto a Cytiva Superdex 200 Increase 10/300 column at 23°C. 44 successive 1 second frames were collected through the SEC elution peak of the sample. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The quoted experimental molecular weight was determined using multi angle laser light scattering and refractive index measurements (MALLS/RI). The molecular weight estimated from the SAXS data using Bayesian inference spans 19–22 kDa. The MALLS/RI data in addition to the unsubtracted SEC-SAXS data frames collected throughout the entire SEC elution (2100 data frames) are made available in the full entry zip archive.

Peroxisome proliferator-activated receptor alpha (PPARα-ABDBD)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   20.1 kDa
 
UniProt   Q07869 (1-184)
Sequence   FASTA