Peroxisome proliferator-activated receptors gamma (PPARγ) and alpha (PPARα)

Cy M Jeffries.

SASDWX3 – Full length peroxisome proliferator-activated receptor gamma (PPARγ)

Peroxisome proliferator-activated receptor gamma
MWexperimental 60 kDa
MWexpected 58 kDa
VPorod 123 nm3
log I(s) 4.47×10-2 4.47×10-3 4.47×10-4 4.47×10-5
Peroxisome proliferator-activated receptor gamma small angle scattering data  s, nm-1
ln I(s)
Peroxisome proliferator-activated receptor gamma Guinier plot ln 4.47×10-2 Rg: 3.7 nm 0 (3.7 nm)-2 s2
(sRg)2I(s)/I(0)
Peroxisome proliferator-activated receptor gamma Kratky plot 1.104 0 3 sRg
p(r)
Peroxisome proliferator-activated receptor gamma pair distance distribution function Rg: 3.9 nm 0 Dmax: 16.5 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of PPARγ in 20 mM HEPES, 150 mM KCl, 1 mM TCEP, 2% v/v glycerol, pH 7.4 were collected on the EMBL P12 beam line at PETRA III (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.123982 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 40.00 μl sample at 8 mg/ml was injected at a 0.35 ml/min flow rate onto a Cytiva Superdex 200 Increase 5/150 column at 23°C. 64 successive 0.250 second frames were collected through the SEC elution peak of the sample. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The quoted experimental molecular weight was determined using multi angle laser light scattering and refractive index measurements (MALLS/RI). The molecular weight estimated from the SAXS data using Bayesian inference spans 56–65 kDa. The MALLS/RI data in addition to the unsubtracted SEC-SAXS data frames collected throughout the entire SEC elution (2880 data frames) are made available in the full entry zip archive.

Peroxisome proliferator-activated receptor gamma (PPARγ)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   57.6 kDa
 
UniProt   P37231 (1-505)
Sequence   FASTA