Peroxisome proliferator-activated receptors gamma (PPARγ) and alpha (PPARα)

Cy M Jeffries.

SASDWZ3 – The intrinsically disordered N-terminal AB domain of peroxisome proliferator-activated receptor gamma (PPARγ-AB)

Peroxisome proliferator-activated receptor gamma
MWexperimental 18 kDa
MWexpected 15 kDa
VPorod 21 nm3
log I(s) 5.94×10-3 5.94×10-4 5.94×10-5 5.94×10-6
Peroxisome proliferator-activated receptor gamma small angle scattering data  s, nm-1
ln I(s)
Peroxisome proliferator-activated receptor gamma Guinier plot ln 5.95×10-3 Rg: 3.5 nm 0 (3.5 nm)-2 s2
(sRg)2I(s)/I(0)
Peroxisome proliferator-activated receptor gamma Kratky plot 1.104 0 3 sRg
p(r)
Peroxisome proliferator-activated receptor gamma pair distance distribution function Rg: 3.8 nm 0 Dmax: 16 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions PPARγ-AB in 25 mM HEPES, 150 mM NaCl, 5 mM NaNO₃, 5 mM TCEP, pH 7.4 were collected on the EMBL P12 beam line at PETRA III (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.123972 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 70.00 μl sample at 7 mg/ml was injected at a 0.70 ml/min flow rate onto a Cytiva Superdex 200 Increase 10/300 column at 23°C. 45 successive 1 second frames were collected through the SEC elution peak of the sample. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The quoted experimental molecular weight was determined using multi angle laser light scattering and refractive index measurements (MALLS/RI). The molecular weight estimated from the SAXS data using Bayesian inference spans 20–23 kDa. The MALLS/RI data in addition to the unsubtracted SEC-SAXS data frames collected throughout the entire SEC elution (2100 data frames) are made available in the full entry zip archive.

Tags: idp
Peroxisome proliferator-activated receptor gamma (PPARγ-AB)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   15.5 kDa
 
UniProt   P37231 (1-137)
Sequence   FASTA