AF4-to-SAXS: Expanded Characterization of Nanoparticles and Proteins at the P12 Biosaxs Beamline

Melissa Graewert Submitted to SASBDB: 2024 Dec 31
Published in SASBDB:

SASDW94 – Horse apoferritin from AF4-SAXS measurements

Ferritin light chain experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Ferritin light chain 24-mer, 480 kDa Equus caballus protein
Buffer: phosphate buffered saline, pH: 7.2
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Jun 19
RgGuinier 5.4 nm
Dmax 13.3 nm
VolumePorod 632 nm3

SASDWA4 – Yeast alcohol dehydrogenase 1 from AF4-SAXS measurements

Alcohol dehydrogenase 1 experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Alcohol dehydrogenase 1 tetramer, 147 kDa Saccharomyces cerevisiae (strain … protein
Buffer: phosphate buffered saline, 1% glycerol, pH: 7.2
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Apr 13
RgGuinier 3.4 nm
Dmax 9.5 nm
VolumePorod 197 nm3

SASDWB4 – Sweet potato beta-amylase from AF4-SAXS measurement

Beta-amylase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Beta-amylase tetramer, 224 kDa Ipomoea batatas protein
Buffer: phosphate buffered saline, 1% glycerol, pH: 7.2
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Apr 13
RgGuinier 4.2 nm
Dmax 12.6 nm
VolumePorod 297 nm3

SASDWC4 – 100 nm polystyrene beads from AF4-SAXS measurements

Sigma-Aldrich polystyrene nanospheres with a diameter of 100 nm experimental SAS data
Sigma-Aldrich polystyrene nanospheres with a diameter of 100 nm Kratky plot
Sample: Sigma-Aldrich polystyrene nanospheres with a diameter of 100 nm monomer, 0 kDa synthetic construct
Buffer: water/detergent solution (0.0125 % (v/v) NovaChem), pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Jun 19
RgGuinier 47.7 nm
Dmax 111.0 nm

SASDWD4 – 20 nm polystyrene beads from AF4-SAXS measurements

Thermo Fisher polystyrene nanospheres with a diameter of 20 nm experimental SAS data
Thermo Fisher polystyrene nanospheres with a diameter of 20 nm Kratky plot
Sample: Thermo Fisher polystyrene nanospheres with a diameter of 20 nm monomer, 1 kDa synthetic construct
Buffer: water/detergent solution (0.0125 % (v/v) NovaChem), pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Jun 19
RgGuinier 9.0 nm
Dmax 25.0 nm