Search

  
Advanced search  

7 hits found for Ahmed Mohammed

SASDPF3 – Receptor-type tyrosine-protein phosphatase kappa extracellular domains (PTPRK-ECDs)

Receptor-type tyrosine-protein phosphatase kappa experimental SAS data
DAMMIN model
Sample: Receptor-type tyrosine-protein phosphatase kappa monomer, 82 kDa Homo sapiens protein
Buffer: 50 mM MES, 250 mM NaCl, 3% v/v glycerol,, pH: 6
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Dec 13
Determinants of receptor tyrosine phosphatase homophilic adhesion: structural comparison of PTPRK and PTPRM extracellular domains Journal of Biological Chemistry :102750 (2022)
...Mohammed A, Svergun D, Jeffries C, Graham S, Sharpe H, Deane J
RgGuinier 7.0 nm
Dmax 26.0 nm
VolumePorod 252 nm3

SASDPG3 – Receptor-type tyrosine-protein phosphatase mu extracellular domains (PTPRM-ECDs)

Receptor-type tyrosine-protein phosphatase mu experimental SAS data
DAMMIN model
Sample: Receptor-type tyrosine-protein phosphatase mu monomer, 82 kDa Homo sapiens protein
Buffer: 50 mM MES, 250 mM NaCl, 3% v/v glycerol,, pH: 6
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Dec 13
Determinants of receptor tyrosine phosphatase homophilic adhesion: structural comparison of PTPRK and PTPRM extracellular domains Journal of Biological Chemistry :102750 (2022)
...Mohammed A, Svergun D, Jeffries C, Graham S, Sharpe H, Deane J
RgGuinier 7.2 nm
Dmax 26.0 nm
VolumePorod 255 nm3

SASDUW5 – C-terminal domain of Ubiquitinating/deubiquitinating enzyme SdeA (SdeA_CTD)

Ubiquitinating/deubiquitinating enzyme SdeA experimental SAS data
MONSA model
Sample: Ubiquitinating/deubiquitinating enzyme SdeA monomer, 39 kDa Legionella pneumophila subsp. … protein
Buffer: 25 mM Tris-HCl, 200 mM NaCl, 5 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Dec 4
Structural Basis for Membrane Targeting and Secretion of Legionella SidE Ubiquitin Ligases
Ahmed Mohammed
RgGuinier 3.9 nm
Dmax 15.7 nm
VolumePorod 62 nm3

SASDUX5 – Type 4 adaptor protein complex IcmS, IcmW and DotL (IcmS/IcmW/DotLc)

Type 4 adapter protein IcmSType 4 adapter protein IcmW (S9A)Type 4 coupling protein DotL experimental SAS data
MONSA model
Sample: Type 4 adapter protein IcmS monomer, 14 kDa Legionella pneumophila subsp. … protein
Type 4 adapter protein IcmW (S9A) monomer, 17 kDa Legionella pneumophila subsp. … protein
Type 4 coupling protein DotL monomer, 15 kDa Legionella pneumophila subsp. … protein
Buffer: 25 mM Tris-HCl, 200 mM NaCl, 5 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Dec 4
Structural Basis for Membrane Targeting and Secretion of Legionella SidE Ubiquitin Ligases
Ahmed Mohammed
RgGuinier 2.8 nm
Dmax 9.6 nm
VolumePorod 71 nm3

SASDUY5 – C-terminal domain of Ubiquitinating/deubiquitinating enzyme SdeA bound to Type 4 adaptor protein complex IcmS, IcmW and DotL (SdeACTD-IcmSWDotLc complex)

Ubiquitinating/deubiquitinating enzyme SdeAType 4 adapter protein IcmSType 4 adapter protein IcmW (S9A)Type 4 coupling protein DotL experimental SAS data
SREFLEX model
Sample: Ubiquitinating/deubiquitinating enzyme SdeA monomer, 39 kDa Legionella pneumophila subsp. … protein
Type 4 adapter protein IcmS monomer, 14 kDa Legionella pneumophila subsp. … protein
Type 4 adapter protein IcmW (S9A) monomer, 17 kDa Legionella pneumophila subsp. … protein
Type 4 coupling protein DotL monomer, 15 kDa Legionella pneumophila subsp. … protein
Buffer: 25 mM Tris-HCl, 200 mM NaCl, 5 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Dec 4
Structural Basis for Membrane Targeting and Secretion of Legionella SidE Ubiquitin Ligases
Ahmed Mohammed
RgGuinier 3.8 nm
Dmax 14.4 nm
VolumePorod 166 nm3

SASDMA9 – Diacetylchitobiose deacetylase (isolated hexamer from SEC-SAXS)

Diacetylchitobiose deacetylase experimental SAS data
PYMOL model
Sample: Diacetylchitobiose deacetylase hexamer, 186 kDa Thermococcus chitonophagus protein
Buffer: 20 mM TRIS, 200 mM NaCl, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Sep 26
Structural, Thermodynamic and Enzymatic Characterization of N,N-Diacetylchitobiose Deacetylase from Pyrococcus chitonophagus. Int J Mol Sci 23(24) (2022)
...Mohammed ASA, Svergun DI, Rypniewski W
RgGuinier 3.6 nm
Dmax 11.2 nm
VolumePorod 317 nm3

SASDMB9 – Diacetylchitobiose deacetylase (oligomeric mixture of hexamers and dodecamers)

Diacetylchitobiose deacetylase experimental SAS data
PYMOL model
Sample: Diacetylchitobiose deacetylase , 185 kDa Thermococcus chitonophagus protein
Buffer: 20 mM TRIS, 200 mM NaCl, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Sep 26
Structural, Thermodynamic and Enzymatic Characterization of N,N-Diacetylchitobiose Deacetylase from Pyrococcus chitonophagus. Int J Mol Sci 23(24) (2022)
...Mohammed ASA, Svergun DI, Rypniewski W
RgGuinier 3.9 nm