Structural and molecular determinants of Candida glabrata metacaspase maturation and activation by calcium.

Conchou L, Doumèche B, Galisson F, Violot S, Dugelay C, Diesis E, Page A, Bienvenu AL, Picot S, Aghajari N, Ballut L, Commun Biol 5(1):1158 (2022) Europe PMC

SASDQN5 – Candida glabrata Metacaspase in 10 mM CaCl2

Metacaspase-1
MWI(0) 19 kDa
MWexpected 46 kDa
VPorod 43 nm3
log I(s) 2.06×10-2 2.06×10-3 2.06×10-4 2.06×10-5
Metacaspase-1 small angle scattering data  s, nm-1
ln I(s)
Metacaspase-1 Guinier plot ln 2.06×10-2 Rg: 1.9 nm 0 (1.9 nm)-2 s2
(sRg)2I(s)/I(0)
Metacaspase-1 Kratky plot 1.104 0 3 sRg
p(r)
Metacaspase-1 pair distance distribution function Rg: 1.8 nm 0 Dmax: 5.4 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of Metacaspase in 10 mM HEPES, 150 mM NaCl, 1% glycerol, 10 mM CaCl2, pH 7.6 were collected on the SWING beam line at SOLEIL (Saint-Aubin, France) using a Eiger 4M detector at a sample-detector distance of 2 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 9.6 mg/ml was injected at a 0.30 ml/min flow rate onto a GE Superdex 200 Increase 5/150 column at 10°C. 400 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The expected MW quoted above (46 kDa) is of the full length protein, prior to self-cleavage into smaller components. These corresponding smaller products have an average MW of 20 kDa.

Metacaspase-1 (CgMCA I)
Mol. type   Protein
Organism   Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
Olig. state   Monomer
Mon. MW   46.0 kDa
 
UniProt   Q6FPX9 (1-392)
Sequence   FASTA