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9 hits found for Bonchuk

SASDMG3 – Tetrameric zinc-finger associated domain of Drosophila Pita protein

LD15650p (Pita, isoform A) experimental SAS data
OTHER model
Sample: LD15650p (Pita, isoform A) tetramer, 52 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, 100 mM NaCl, 5 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Jul 8
Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure (2022)
Bonchuk AN, Boyko KM, Nikolaeva AY, Burtseva AD, Popov VO, Georgiev PG
RgGuinier 2.4 nm
Dmax 7.6 nm
VolumePorod 62 nm3

SASDMH3 – Zinc-finger associated domain of Drosophila Pita protein L45A

LD15650p (Pita, isoform A; L45A) experimental SAS data
OTHER model
Sample: LD15650p (Pita, isoform A; L45A) dimer, 26 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, 100 mM NaCl, 5 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Dec 17
Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure (2022)
Bonchuk AN, Boyko KM, Nikolaeva AY, Burtseva AD, Popov VO, Georgiev PG
RgGuinier 2.3 nm
Dmax 9.5 nm
VolumePorod 35 nm3

SASDMJ3 – Zinc-finger-associated domain from Drosophila Motif 1 binding protein (M1BP)

LD30467p (Motif 1 binding protein) experimental SAS data
OTHER model
Sample: LD30467p (Motif 1 binding protein) dimer, 22 kDa Drosophila melanogaster protein
Buffer: 20 mM Bis-Tris-Propane, 100 mM NaCl, 5 mM DTT, pH: 8.5
Experiment: SAXS data collected at BM29, ESRF on 2018 Dec 17
Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure (2022)
Bonchuk AN, Boyko KM, Nikolaeva AY, Burtseva AD, Popov VO, Georgiev PG
RgGuinier 2.3 nm
Dmax 9.1 nm
VolumePorod 33 nm3

SASDPY6 – BTB domain of longitudinals lacking protein (LOLA) at 1.0 mg/ml

Longitudinals lacking protein, isoform G experimental SAS data
ALPHAFOLD model
Sample: Longitudinals lacking protein, isoform G hexamer, 92 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, pH 7.4, 200 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Jul 8
BTB domains: A structural view of evolution, multimerization, and protein-protein interactions. Bioessays :e2200179 (2022)
Bonchuk A, Balagurov K, Georgiev P
RgGuinier 4.1 nm
Dmax 20.0 nm
VolumePorod 213 nm3

SASDPZ6 – BTB domain of longitudinals lacking protein (LOLA) at 3.0 mg/ml

Longitudinals lacking protein, isoform G experimental SAS data
Longitudinals lacking protein, isoform G Kratky plot
Sample: Longitudinals lacking protein, isoform G hexamer, 92 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, pH 7.4, 200 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Jul 8
BTB domains: A structural view of evolution, multimerization, and protein-protein interactions. Bioessays :e2200179 (2022)
Bonchuk A, Balagurov K, Georgiev P
RgGuinier 4.8 nm
Dmax 24.0 nm
VolumePorod 263 nm3

SASDP27 – BTB domain of CG6765 protein at 1.5 mg/ml

Uncharacterized protein, isoform A experimental SAS data
ALPHAFOLD model
Sample: Uncharacterized protein, isoform A hexamer, 92 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, pH 7.4, 200 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Jul 8
BTB domains: A structural view of evolution, multimerization, and protein-protein interactions. Bioessays :e2200179 (2022)
Bonchuk A, Balagurov K, Georgiev P
RgGuinier 3.7 nm
Dmax 15.0 nm
VolumePorod 167 nm3

SASDP37 – BTB domain of CG6765 protein at 3.0 mg/ml

Uncharacterized protein, isoform A experimental SAS data
Uncharacterized protein, isoform A Kratky plot
Sample: Uncharacterized protein, isoform A hexamer, 92 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, pH 7.4, 200 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Jul 8
BTB domains: A structural view of evolution, multimerization, and protein-protein interactions. Bioessays :e2200179 (2022)
Bonchuk A, Balagurov K, Georgiev P
RgGuinier 4.1 nm
Dmax 17.0 nm
VolumePorod 192 nm3

SASDP59 – BTB domain of longitudinals lacking (LOLA) protein

Longitudinals lacking protein, isoform G experimental SAS data
ALPHAFOLD model
Sample: Longitudinals lacking protein, isoform G hexamer, 92 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, pH 7.4, 200 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2016 Jul 20
The Arthropoda-specific Tramtrack group BTB protein domains use previously unknown interface to form hexamers. Elife 13 (2024)
Bonchuk AN, Balagurov KI, Baradaran R, Boyko KM, Sluchanko NN, Khrustaleva AM, Burtseva AD, Arkova OV, Khalisova KK, Popov VO, Naschberger A, Georgiev PG
RgGuinier 4.1 nm
Dmax 14.5 nm
VolumePorod 189 nm3

SASDP49 – BTB domain of CG6765 protein at 1.5 mg/ml

Uncharacterized protein, isoform A experimental SAS data
ALPHAFOLD model
Sample: Uncharacterized protein, isoform A hexamer, 92 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, pH 7.4, 200 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2016 Jul 20
The Arthropoda-specific Tramtrack group BTB protein domains use previously unknown interface to form hexamers. Elife 13 (2024)
Bonchuk AN, Balagurov KI, Baradaran R, Boyko KM, Sluchanko NN, Khrustaleva AM, Burtseva AD, Arkova OV, Khalisova KK, Popov VO, Naschberger A, Georgiev PG
RgGuinier 3.7 nm
Dmax 12.7 nm
VolumePorod 166 nm3