Small Angle Scattering Biological Data Bank SASBDB

Browse by DISSEMINATION: Published

SASDVT5 – Marchantia polymorpha Auxin Response Factor 3

Auxin response factor experimental SAS data

Sample:	Auxin response factor monomer, 46 kDa Marchantia polymorpha protein
Buffer:	20 mM Tris-HCl, 150 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BL11 - NCD, ALBA on 2019 Dec 3

The structure and function of the DNA binding domain of class B MpARF2 share more traits with class A AtARF5 than to that of class B AtARF1. Structure (2025)
Crespo I, Malfois M, Rienstra J, Tarrés-Solé A, van den Berg W, Weijers D, Boer DR

R_g^Guinier	2.6	nm
D_max	6.2	nm
Volume^Porod	59	nm³

SASDVU5 – Marchantia polymorpha Auxin Response Factor 3 in complex with high affinity DNA

Auxin response factorHigh Affinity ARF binding sequence inverted repeat with 6 nucleotide spacing experimental SAS data

Sample:	Auxin response factor monomer, 46 kDa Marchantia polymorpha protein High Affinity ARF binding sequence inverted repeat with 6 nucleotide spacing dimer, 12 kDa DNA
Buffer:	20 mM Tris-HCl, 150 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BL11 - NCD, ALBA on 2019 Dec 3

R_g^Guinier	3.1	nm
D_max	8.4	nm
Volume^Porod	67	nm³

SASDVV5 – Arabidopsis thaliana Auxin Response Factor 1 in complex with high affinity DNA

Auxin response factor 1High Affinity ARF binding sequence inverted repeat with 7 nucleotide spacing experimental SAS data

Auxin response factor 1 High Affinity ARF binding sequence inverted repeat with 7 nucleotide spacing Kratky plot

Sample:	Auxin response factor 1 dimer, 81 kDa Arabidopsis thaliana protein High Affinity ARF binding sequence inverted repeat with 7 nucleotide spacing dimer, 13 kDa DNA
Buffer:	20 mM Tris-HCl, 150 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BL11 - NCD, ALBA on 2019 Dec 3

R_g^Guinier	3.6	nm
D_max	10.5	nm
Volume^Porod	136	nm³

SASDVC8 – Hendra virus protein P/V/W PNT3 domain

Hendra virus protein P/V/W PNT3 domain Rg histogram

Sample:	Protein W monomer, 15 kDa Hendra virus (isolate … protein
Buffer:	20 mM HEPES, 150 mM NaCl, pH: 7.2
Experiment:	SAXS data collected at BM29, ESRF on 2023 Jun 13

Unraveling the molecular grammar and the structural transitions underlying the fibrillation of a viral fibrillogenic domain. Protein Sci 34(3):e70068 (2025)
Gondelaud F, Leval J, Arora L, Walimbe A, Bignon C, Ptchelkine D, Brocca S, Mukhopadyay S, Longhi S

R_g^Guinier	3.4	nm
D_max	13.5	nm
Volume^Porod	42	nm³

SASDVD8 – Hendra virus protein P/V/W PNT3 low-K domain

Protein W (artificial PNT3 variant - low-kappa) experimental SAS data

Hendra virus protein P/V/W PNT3 low-K domain Rg histogram

Sample:	Protein W (artificial PNT3 variant - low-kappa) monomer, 15 kDa Hendra virus (isolate … protein
Buffer:	20 mM HEPES, 150 mM NaCl, pH: 7.2
Experiment:	SAXS data collected at BM29, ESRF on 2023 Jun 13

R_g^Guinier	3.8	nm
D_max	18.0	nm
Volume^Porod	48	nm³

SASDVE8 – Hendra virus protein P/V/W PNT3 high-K domain

Protein W (artificial PNT3 variant - high-kappa) experimental SAS data

Hendra virus protein P/V/W PNT3 high-K domain Rg histogram

Sample:	Protein W (artificial PNT3 variant - high-kappa) monomer, 15 kDa Hendra virus (isolate … protein
Buffer:	20 mM HEPES, 150 mM NaCl, pH: 7.2
Experiment:	SAXS data collected at SWING, SOLEIL on 2024 Apr 5

R_g^Guinier	3.1	nm
D_max	14.7	nm
Volume^Porod	54	nm³

SASDWN8 – β-Lactoglobulin A at 17.4 µM (pH 7.0)

Beta-lactoglobulin experimental SAS data

Sample:	Beta-lactoglobulin, 20 kDa Bos taurus protein
Buffer:	20 mM MOPS, 100 mM NaCl, 1 mM TCEP, pH:
Experiment:	SAXS data collected at BM29, ESRF on 2021 Nov 21

KDSAXS: A tool for Analyzing Binding Equilibria with SAXS Data using Explicit Models Journal of Molecular Biology :169103 (2025)
Gomes T, Ruiz L, Martin-Malpartida P, Bernadó P, Baptista A, Macias M, Cordeiro T

R_g^Guinier	1.9	nm
D_max	6.0	nm
Volume^Porod	31	nm³

SASDWP8 – β-Lactoglobulin A at 26.1 µM (pH 7.0)

Sample:	Beta-lactoglobulin, 20 kDa Bos taurus protein
Buffer:	20 mM MOPS, 100 mM NaCl, 1 mM TCEP, pH:
Experiment:	SAXS data collected at BM29, ESRF on 2021 Nov 21

R_g^Guinier	2.0	nm
D_max	8.5	nm
Volume^Porod	30	nm³

SASDWQ8 – β-Lactoglobulin A at 34.8 µM (pH 7.0)

Sample:	Beta-lactoglobulin, 20 kDa Bos taurus protein
Buffer:	20 mM MOPS, 100 mM NaCl, 1 mM TCEP, pH:
Experiment:	SAXS data collected at BM29, ESRF on 2021 Nov 21

R_g^Guinier	2.0	nm
D_max	8.5	nm
Volume^Porod	33	nm³

SASDWR8 – β-Lactoglobulin A at 52.2 µM (pH 7.0)

Sample:	Beta-lactoglobulin, 20 kDa Bos taurus protein
Buffer:	20 mM MOPS, 100 mM NaCl, 1 mM TCEP, pH:
Experiment:	SAXS data collected at BM29, ESRF on 2021 Nov 21

R_g^Guinier	2.1	nm
D_max	9.0	nm
Volume^Porod	40	nm³

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