Browse by MODEL: Ab initio only

SASDB84 – CyaA Block V

Adenylate cyclase toxin Block V experimental SAS data
DAMMIF model
Sample: Adenylate cyclase toxin Block V monomer, 16 kDa Bordetella pertussis protein
Buffer: 10 mM Tris HCl 150 mM NaCl 10 mM CaCl2, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Oct 31
Calcium-Driven Folding of RTX Domain β-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts. Mol Cell 62(1):47-62 (2016)
Bumba L, Masin J, Macek P, Wald T, Motlova L, Bibova I, Klimova N, Bednarova L, Veverka V, Kachala M, Svergun DI, Barinka C, Sebo P
RgGuinier 1.8 nm
Dmax 5.9 nm
VolumePorod 24 nm3

SASDBG3 – Leucine-rich repeat transmembrane neuronal protein 2, cLRRTM2 (stability engineered construct)

Mouse Leucine-rich repeat transmembrane neuronal protein 2, cLRRTM2 (stability engineered construct) experimental SAS data
DAMMIN model
Sample: Mouse Leucine-rich repeat transmembrane neuronal protein 2, cLRRTM2 (stability engineered construct) monomer, 40 kDa Mus musculus protein
Buffer: 20 mM Tris 150 mM NaCl 3% glycerol, pH: 7.4
Experiment: SAXS data collected at ID14-3, ESRF on 2015 Sep 27
Crystal Structure of an Engineered LRRTM2 Synaptic Adhesion Molecule and a Model for Neurexin Binding. Biochemistry 55(6):914-26 (2016)
Paatero A, Rosti K, Shkumatov AV, Sele C, Brunello C, Kysenius K, Singha P, Jokinen V, Huttunen H, Kajander T
RgGuinier 3.3 nm
Dmax 13.1 nm

SASDBH3 – Leucine-rich repeat transmembrane neuronal protein 2, LRRTM2 (fragment 30-380)

Mouse Leucine-rich repeat transmembrane neuronal protein 2, LRRTM2 experimental SAS data
DAMMIN model
Sample: Mouse Leucine-rich repeat transmembrane neuronal protein 2, LRRTM2 dimer, 80 kDa Mus musculus protein
Buffer: 20 mM Tris 150 mM NaCl 3% glycerol, pH: 7.4
Experiment: SAXS data collected at ID14-3, ESRF on 2015 Jun 28
Crystal Structure of an Engineered LRRTM2 Synaptic Adhesion Molecule and a Model for Neurexin Binding. Biochemistry 55(6):914-26 (2016)
Paatero A, Rosti K, Shkumatov AV, Sele C, Brunello C, Kysenius K, Singha P, Jokinen V, Huttunen H, Kajander T
RgGuinier 4.2 nm
Dmax 21.6 nm

SASDB44 – Aureochrome 1a from P. tricornutum, amino acids 148-378 (N-terminal truncation), dark state

Aureochrome 1a (N-terminally truncated) experimental SAS data
DAMMIN model
Sample: Aureochrome 1a (N-terminally truncated) dimer, 53 kDa Phaeodactylum tricornutum protein
Buffer: 20 mM HEPES 100 mM NaCl 10 mM MgCl2 5% w/v glycerol, pH: 7.5
Experiment: SAXS data collected at cSAXS, Swiss Light Source on 2015 Mar 11
Blue light-induced LOV domain dimerization enhances the affinity of Aureochrome 1a for its target DNA sequence. Elife 5:e11860 (2016)
Heintz U, Schlichting I
RgGuinier 2.9 nm
Dmax 9.8 nm
VolumePorod 90 nm3

SASDAJ8 – Light state solution structure of Aureochrome1a- A´α-LOV-Jα

Aureochrome1a-A´α-LOV-Jα experimental SAS data
DAMMIF model
Sample: Aureochrome1a-A´α-LOV-Jα dimer, 36 kDa Phaeodactylum tricornutum protein
Buffer: 10 mM Tris 300 mM NaCl, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2015 Mar 16
Structure of a Native-like Aureochrome 1a LOV Domain Dimer from Phaeodactylum tricornutum. Structure 24(1):171-178 (2016)
Banerjee A, Herman E, Kottke T, Essen LO
RgGuinier 3.3 nm
Dmax 13.0 nm
VolumePorod 88 nm3

SASDAK8 – Dark state solution structure of Aureochrome1a- A´α-LOV-Jα

Aureochrome1a-A´α-LOV-Jα experimental SAS data
DAMMIF model
Sample: Aureochrome1a-A´α-LOV-Jα dimer, 36 kDa Phaeodactylum tricornutum protein
Buffer: 10 mM Tris 300 mM NaCl, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2015 Mar 16
Structure of a Native-like Aureochrome 1a LOV Domain Dimer from Phaeodactylum tricornutum. Structure 24(1):171-178 (2016)
Banerjee A, Herman E, Kottke T, Essen LO
RgGuinier 3.2 nm
Dmax 13.0 nm
VolumePorod 67 nm3

SASDBD2 – Dark state solution structure of untagged Aureochrome1a- A´α-LOV-Jα

Aureochrome1a- A´α-LOV-Jα (Dark State) experimental SAS data
DAMMIN model
Sample: Aureochrome1a- A´α-LOV-Jα (Dark State) dimer, 32 kDa Phaeodactylum tricornutum protein
Buffer: 10 mM Tris-HCl, 300 mM NaCl, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2015 Sep 9
Structure of a Native-like Aureochrome 1a LOV Domain Dimer from Phaeodactylum tricornutum. Structure 24(1):171-178 (2016)
Banerjee A, Herman E, Kottke T, Essen LO
RgGuinier 2.7 nm
Dmax 9.2 nm
VolumePorod 58 nm3

SASDBE2 – Light state solution structure of untagged Aureochrome1a- A´α-LOV-Jα

Aureochrome1a- A´α-LOV-Jα (Light State) experimental SAS data
DAMMIN model
Sample: Aureochrome1a- A´α-LOV-Jα (Light State) dimer, 32 kDa Phaeodactylum tricornutum protein
Buffer: 10 mM Tris-HCl, 300 mM NaCl, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2015 Sep 9
Structure of a Native-like Aureochrome 1a LOV Domain Dimer from Phaeodactylum tricornutum. Structure 24(1):171-178 (2016)
Banerjee A, Herman E, Kottke T, Essen LO
RgGuinier 2.6 nm
Dmax 9.8 nm
VolumePorod 66 nm3

SASDAS7 – mouse olfactomedin-1

Noelin experimental SAS data
DAMMIF model
Sample: Noelin tetramer, 256 kDa Mus musculus protein
Buffer: 20 mM HEPES 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2013 Nov 6
Olfactomedin-1 Has a V-shaped Disulfide-linked Tetrameric Structure. J Biol Chem 290(24):15092-101 (2015)
Pronker MF, Bos TG, Sharp TH, Thies-Weesie DM, Janssen BJ
RgGuinier 8.5 nm
Dmax 30.0 nm
VolumePorod 616 nm3

SASDMX8 – Iron oxide nanoparticles (NP-N2) (30% of 9 kDa PEG tails)

Iron oxide nanoparticles (NP-N2) (30% of 9 kDa PEG tails) experimental SAS data
OTHER [STATIC IMAGE] model
Sample: Iron oxide nanoparticles (NP-N2) (30% of 9 kDa PEG tails) 0, 5000 kDa
Buffer: 0.05 M Tris-HCl, 0.05 M NaCl, 0.01 M KCl, 0.005 M MgCl2, pH: 4.6
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2011 Jun 23
Coat Protein-Dependent Behavior of Poly(ethylene glycol) Tails in Iron Oxide Core Virus-like Nanoparticles. ACS Appl Mater Interfaces 7(22):12089-98 (2015)
Malyutin AG, Cheng H, Sanchez-Felix OR, Carlson K, Stein BD, Konarev PV, Svergun DI, Dragnea B, Bronstein LM
Dmax 25.0 nm