Browse by MACROMOLECULE type: protein

SASDNM8 – Quorum sensing master protein (QseM)

DUF2285 domain-containing protein experimental SAS data
DUF2285 domain-containing protein Kratky plot
Sample: DUF2285 domain-containing protein monomer, 11 kDa Mesorhizobium loti protein
Buffer: 100 mM NaCl, 50 mM Tris-HCl, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2017 Dec 1
DUF2285 is a novel helix-turn-helix domain variant that orchestrates both activation and antiactivation of conjugative element transfer in proteobacteria. Nucleic Acids Res (2023)
Jowsey WJ, Morris CRP, Hall DA, Sullivan JT, Fagerlund RD, Eto KY, Solomon PD, Mackay JP, Bond CS, Ramsay JP, Ronson CW
RgGuinier 1.5 nm
Dmax 5.7 nm
VolumePorod 15 nm3

SASDRR5 – Like Early Starvation 1

At3g55760 experimental SAS data
GASBOR model
Sample: At3g55760 monomer, 60 kDa Arabidopsis thaliana protein
Buffer: 50 mM Tris, 150 mM NaCl, 10% glycerol, 2 mM DTT, pH: 8
Experiment: SAXS data collected at SWING, SOLEIL on 2016 Dec 8
LIKE EARLY STARVATION 1 and EARLY STARVATION 1 promote and stabilize amylopectin phase transition in starch biosynthesis. Sci Adv 9(21):eadg7448 (2023)
Liu C, Pfister B, Osman R, Ritter M, Heutinck A, Sharma M, Eicke S, Fischer-Stettler M, Seung D, Bompard C, Abt MR, Zeeman SC
RgGuinier 3.7 nm
Dmax 16.0 nm
VolumePorod 121 nm3

SASDRS5 – Early Starvation 1 from Arabidopsis thaliana

Inactive purple acid phosphatase-like protein experimental SAS data
Inactive purple acid phosphatase-like protein Kratky plot
Sample: Inactive purple acid phosphatase-like protein monomer, 40 kDa Arabidopsis thaliana protein
Buffer: 50 mM Tris, 150 mM NaCl, 10% glycerol, 2 mM DTT, pH: 8
Experiment: SAXS data collected at SWING, SOLEIL on 2016 Dec 8
LIKE EARLY STARVATION 1 and EARLY STARVATION 1 promote and stabilize amylopectin phase transition in starch biosynthesis. Sci Adv 9(21):eadg7448 (2023)
Liu C, Pfister B, Osman R, Ritter M, Heutinck A, Sharma M, Eicke S, Fischer-Stettler M, Seung D, Bompard C, Abt MR, Zeeman SC
RgGuinier 3.2 nm
Dmax 11.5 nm
VolumePorod 83 nm3

SASDSM2 – AtCP12-2 in an oxidized form

CP12-2 (D77G) experimental SAS data
AtCP12-2 in an oxidized form Rg histogram
Sample: CP12-2 (D77G) monomer, 8 kDa Arabidopsis thaliana protein
Buffer: 25 mM potassium phosphate, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Feb 15
Conformational Disorder Analysis of the Conditionally Disordered Protein CP12 from Arabidopsis thaliana in Its Different Redox States International Journal of Molecular Sciences 24(11):9308 (2023)
Del Giudice A, Gurrieri L, Galantini L, Fanti S, Trost P, Sparla F, Fermani S
RgGuinier 2.0 nm
Dmax 9.0 nm
VolumePorod 10 nm3

SASDSN2 – AtCP12-2 in a reduced form

CP12-2 (D77G) experimental SAS data
AtCP12-2 in a reduced form Rg histogram
Sample: CP12-2 (D77G) monomer, 8 kDa Arabidopsis thaliana protein
Buffer: 25 mM potassium phosphate, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Feb 15
Conformational Disorder Analysis of the Conditionally Disordered Protein CP12 from Arabidopsis thaliana in Its Different Redox States International Journal of Molecular Sciences 24(11):9308 (2023)
Del Giudice A, Gurrieri L, Galantini L, Fanti S, Trost P, Sparla F, Fermani S
RgGuinier 2.3 nm
Dmax 11.6 nm
VolumePorod 27 nm3

SASDPY5 – Gcf1p protein

Gcf1p experimental SAS data
EOM/RANCH model
Sample: Gcf1p monomer, 26 kDa Candida albicans (strain … protein
Buffer: 50mM Tris, 750mM NaCl, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2017 Oct 10
Structural analysis of the Candida albicans mitochondrial DNA maintenance factor Gcf1p reveals a dynamic DNA-bridging mechanism. Nucleic Acids Res (2023)
Tarrés-Solé A, Battistini F, Gerhold JM, Piétrement O, Martínez-García B, Ruiz-López E, Lyonnais S, Bernadó P, Roca J, Orozco M, Le Cam E, Sedman J, Solà M
RgGuinier 3.7 nm
Dmax 14.5 nm
VolumePorod 80 nm3

SASDKS8 – Escherichia coli anaerobic fatty acid beta-oxidation trifunctional enzyme subunit alpha (anEcTFE-alpha)

Fatty acid oxidation complex subunit alpha experimental SAS data
DAMMIF model
Sample: Fatty acid oxidation complex subunit alpha monomer, 77 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 500 mM NaCl, 5% glycerol, 2.5 mM DTT, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2018 Jul 9
Structural basis for different membrane-binding properties of E. coli anaerobic and human mitochondrial β-oxidation trifunctional enzymes. Structure (2023)
Sah-Teli SK, Pinkas M, Hynönen MJ, Butcher SJ, Wierenga RK, Novacek J, Venkatesan R
RgGuinier 3.3 nm
Dmax 11.2 nm
VolumePorod 145 nm3

SASDRZ6 – D1-D2 N-terminal domains of thrombospondin type-1 domain-containing protein 7A

Thrombospondin type-1 domain-containing protein 7A experimental SAS data
ALPHAFOLD PROTEIN STRUCTURE DATABASE model
Sample: Thrombospondin type-1 domain-containing protein 7A monomer, 17 kDa Homo sapiens protein
Buffer: 25mM Tris, 150 mM NaCl, 5 mM NaNO3, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2022 Aug 23
Structure of the N-terminal didomain d1_d2 of the Thrombospondin type-1 domain-containing 7A (2023)
Bochel A, Mortensen S, Seifert L, Hengel F, Jeffries C, Chojnowski G, Kretz O, Huber T, Tomas N, Wilmanns M
RgGuinier 2.5 nm
Dmax 9.5 nm
VolumePorod 28 nm3

SASDR27 – Triple mutant (D116A, H118A, Y176A) of the D1-D2 N-terminal domains of thrombospondin type-1 domain-containing protein 7A

Thrombospondin type-1 domain-containing protein 7A (D116A, H118A, Y176A) experimental SAS data
Triple mutant (D116A, H118A, Y176A) of the D1-D2 N-terminal domains of thrombospondin type-1 domain-containing protein 7A Rg histogram
Sample: Thrombospondin type-1 domain-containing protein 7A (D116A, H118A, Y176A) monomer, 16 kDa Homo sapiens protein
Buffer: 25mM Tris, 150 mM NaCl, 5 mM NaNO3, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2022 Dec 2
Structure of the N-terminal didomain d1_d2 of the Thrombospondin type-1 domain-containing 7A (2023)
Bochel A, Mortensen S, Seifert L, Hengel F, Jeffries C, Chojnowski G, Kretz O, Huber T, Tomas N, Wilmanns M
RgGuinier 2.7 nm
Dmax 11.5 nm
VolumePorod 19 nm3

SASDP98 – Human apo iron-sulfur cluster assembly 1 (ISCA1)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
DAMMIF model
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial monomer, 14 kDa Homo sapiens protein
Buffer: 50 mM phosphate, 150 mM NaCl, 5 mM DTT, pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Mar 27
Structural plasticity of NFU1 upon interaction with binding partners: insights into the mitochondrial [4Fe-4S] cluster pathway Journal of Molecular Biology :168154 (2023)
Da Vela S, Saudino G, Lucarelli F, Banci L, Svergun D, Ciofi-Baffoni S
RgGuinier 1.9 nm
Dmax 6.8 nm
VolumePorod 25 nm3