Browse by MACROMOLECULE type: protein

SASDPC7 – Ordered core SD1 domain of KNR4

Cell wall assembly regulator SMI1 experimental SAS data
DAMMIN model
Sample: Cell wall assembly regulator SMI1 monomer, 31 kDa Saccharomyces cerevisiae (strain … protein
Buffer: 100 mM MES, 300 mM NaCl, pH: 6
Experiment: SAXS data collected at BM29, ESRF on 2016 Mar 18
The conserved yeast protein Knr4 involved in cell wall integrity is a multi-domain intrinsically disordered protein. J Mol Biol :168048 (2023)
Batista M, Donker EIM, Bon C, Guillien M, Caisso A, Mourey Funding L, Marie François Funding J, Maveyraud L, Zerbib D
RgGuinier 2.3 nm
Dmax 8.0 nm
VolumePorod 62 nm3

SASDPD7 – C-terminal truncated KNR4

Cell wall assembly regulator SMI1 experimental SAS data
DAMMIN model
Sample: Cell wall assembly regulator SMI1 monomer, 40 kDa Saccharomyces cerevisiae (strain … protein
Buffer: 100 mM MES, 300 mM NaCl, pH: 6
Experiment: SAXS data collected at BM29, ESRF on 2017 Mar 4
The conserved yeast protein Knr4 involved in cell wall integrity is a multi-domain intrinsically disordered protein. J Mol Biol :168048 (2023)
Batista M, Donker EIM, Bon C, Guillien M, Caisso A, Mourey Funding L, Marie François Funding J, Maveyraud L, Zerbib D
RgGuinier 2.8 nm
Dmax 11.0 nm
VolumePorod 79 nm3

SASDPE7 – Full length KNR4

Cell wall assembly regulator SMI1 experimental SAS data
DAMMIN model
Sample: Cell wall assembly regulator SMI1 monomer, 57 kDa Saccharomyces cerevisiae (strain … protein
Buffer: 100 mM MES, 300 mM NaCl, pH: 6
Experiment: SAXS data collected at BM29, ESRF on 2016 Mar 7
The conserved yeast protein Knr4 involved in cell wall integrity is a multi-domain intrinsically disordered protein. J Mol Biol :168048 (2023)
Batista M, Donker EIM, Bon C, Guillien M, Caisso A, Mourey Funding L, Marie François Funding J, Maveyraud L, Zerbib D
RgGuinier 4.8 nm
Dmax 17.0 nm
VolumePorod 117 nm3

SASDRV6 – Transcription regulator PaaR2

Phage repressor protein CI (C120S) experimental SAS data
OTHER model
Sample: Phage repressor protein CI (C120S) octamer, 122 kDa Escherichia coli O157:H7 protein
Buffer: 20 mM Tris-HCl, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at SWING, SOLEIL on 2022 Apr 16
Regulation of the Escherichia coli paaR2-paaA2-ParD2 toxin-antitoxin system
Marusa Prolic Kalinsek
RgGuinier 5.0 nm
Dmax 16.8 nm
VolumePorod 428 nm3

SASDRW6 – YdaS, a cro-type repressor from Escherichai coli O157:H7 cryptic prophage CP-933

Phage antirepressor protein Cro experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Phage antirepressor protein Cro monomer, 12 kDa Escherichia coli O157:H7 protein
Buffer: 20 mM sodium acetate, 150 mM NaCl, 1 mM TCEP, pH: 5.5
Experiment: SAXS data collected at SWING, SOLEIL on 2018 Feb 5
Structural-function relationship of YdaS, a Cro-type repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7
Marusa Prolic Kalinsek
RgGuinier 2.1 nm
Dmax 7.6 nm
VolumePorod 19 nm3

SASDHN7 – Emfourin (M4in) from Serratia proteamaculans, M4 family peptidase inhibitor

Emfourin (Protealysin-associated protein) experimental SAS data
DAMFILT model
Sample: Emfourin (Protealysin-associated protein) monomer, 13 kDa Serratia proteamaculans protein
Buffer: 50 mM Tris-HCL, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Apr 22
NMR structure of emfourin, a novel protein metalloprotease inhibitor: insights into the mechanism of action. J Biol Chem :104585 (2023)
Bozin T, Berdyshev I, Chukhontseva K, Karaseva M, Konarev P, Varizhuk A, Lesovoy D, Arseniev A, Kostrov S, Bocharov E, Demidyuk I
RgGuinier 1.7 nm
Dmax 5.5 nm
VolumePorod 16 nm3

SASDRJ2 – Chicken Netrin-1 ΔC monomer (experiment ID: sm22113-7/sample1)

Netrin-1 experimental SAS data
Sample: Netrin-1 monomer, 50 kDa Gallus gallus protein
Buffer: 20 mM Tris-HCl, 500 mM NaCl, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Oct 24
The dynamic nature of netrin-1 and the structural basis for glycosaminoglycan fragment-induced filament formation Nature Communications 14(1) (2023)
Meier M, Gupta M, Akgül S, McDougall M, Imhof T, Nikodemus D, Reuten R, Moya-Torres A, To V, Ferens F, Heide F, Padilla-Meier G, Kukura P, Huang W, Gerisch B, Mörgelin M, Poole K, Antebi A, Koch M, Stetefeld J
RgGuinier 4.0 nm
Dmax 18.0 nm
VolumePorod 103 nm3

SASDRK2 – Chicken Netrin-1 ΔC dimer (experiment ID: sm22113-7/sample1)

Netrin-1 experimental SAS data
Sample: Netrin-1 dimer, 99 kDa Gallus gallus protein
Buffer: 20 mM Tris-HCl, 500 mM NaCl, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Oct 24
The dynamic nature of netrin-1 and the structural basis for glycosaminoglycan fragment-induced filament formation Nature Communications 14(1) (2023)
Meier M, Gupta M, Akgül S, McDougall M, Imhof T, Nikodemus D, Reuten R, Moya-Torres A, To V, Ferens F, Heide F, Padilla-Meier G, Kukura P, Huang W, Gerisch B, Mörgelin M, Poole K, Antebi A, Koch M, Stetefeld J
RgGuinier 5.9 nm
Dmax 21.3 nm
VolumePorod 145 nm3

SASDRL2 – Chicken Netrin-1 ΔC monomer (experiment ID: sm22113-7/sample11)

Netrin-1 experimental SAS data
Sample: Netrin-1 monomer, 50 kDa Gallus gallus protein
Buffer: 50 mM Tris-HCl, 200 mM NaCl, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Oct 24
The dynamic nature of netrin-1 and the structural basis for glycosaminoglycan fragment-induced filament formation Nature Communications 14(1) (2023)
Meier M, Gupta M, Akgül S, McDougall M, Imhof T, Nikodemus D, Reuten R, Moya-Torres A, To V, Ferens F, Heide F, Padilla-Meier G, Kukura P, Huang W, Gerisch B, Mörgelin M, Poole K, Antebi A, Koch M, Stetefeld J
RgGuinier 4.1 nm
Dmax 21.0 nm
VolumePorod 84 nm3

SASDRM2 – Chicken Netrin-1 ΔC dimer (experiment ID: sm22113-7/sample11)

Netrin-1 experimental SAS data
Sample: Netrin-1 dimer, 99 kDa Gallus gallus protein
Buffer: 50 mM Tris-HCl, 200 mM NaCl, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Oct 24
The dynamic nature of netrin-1 and the structural basis for glycosaminoglycan fragment-induced filament formation Nature Communications 14(1) (2023)
Meier M, Gupta M, Akgül S, McDougall M, Imhof T, Nikodemus D, Reuten R, Moya-Torres A, To V, Ferens F, Heide F, Padilla-Meier G, Kukura P, Huang W, Gerisch B, Mörgelin M, Poole K, Antebi A, Koch M, Stetefeld J
RgGuinier 5.8 nm
Dmax 23.0 nm
VolumePorod 142 nm3