Small Angle Scattering Biological Data Bank SASBDB

Browse by MACROMOLECULE type: protein

SASDFF7 – Pseudomonas putida CBB5 NdmA hexamer

Methylxanthine N1-demethylase NdmA experimental SAS data

Sample:	Methylxanthine N1-demethylase NdmA hexamer, 254 kDa Pseudomonas putida protein
Buffer:	20 mM HEPES 150 mM NaCl 2 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2018 May 21

Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex. J Mol Biol 431(19):3647-3661 (2019)
Kim JH, Kim BH, Brooks S, Kang SY, Summers RM, Song HK

R_g^Guinier	4.2	nm
D_max	11.0	nm

SASDFG7 – Pseudomonas putida CBB5 NdmB hexamer

Methylxanthine N3-demethylase NdmB experimental SAS data

Sample:	Methylxanthine N3-demethylase NdmB hexamer, 258 kDa Pseudomonas putida protein
Buffer:	20 mM HEPES 150 mM NaCl 2 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2018 May 21

Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex. J Mol Biol 431(19):3647-3661 (2019)
Kim JH, Kim BH, Brooks S, Kang SY, Summers RM, Song HK

R_g^Guinier	4.3	nm
D_max	12.2	nm

SASDFH7 – Pseudomonas putida CBB5 NdmAB complex

Methylxanthine N1-demethylase NdmAMethylxanthine N3-demethylase NdmB experimental SAS data

Sample:	Methylxanthine N1-demethylase NdmA trimer, 127 kDa Pseudomonas putida protein Methylxanthine N3-demethylase NdmB trimer, 129 kDa Pseudomonas putida protein
Buffer:	20 mM HEPES 150 mM NaCl 2 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2018 May 21

Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex. J Mol Biol 431(19):3647-3661 (2019)
Kim JH, Kim BH, Brooks S, Kang SY, Summers RM, Song HK

R_g^Guinier	4.2	nm
D_max	10.9	nm

SASDFJ7 – Pseudomonas putida CBB5 mCherry-NdmA/ECFP-NdmB complex - static

Sample:	Methylxanthine N1-demethylase NdmA trimer, 207 kDa Pseudomonas putida protein Methylxanthine N3-demethylase NdmB trimer, 208 kDa Pseudomonas putida protein
Buffer:	20 mM HEPES 150 mM NaCl 2 mM TCEP 10% v/v glycerol, pH: 7.5
Experiment:	SAXS data collected at 4C, Pohang Accelerator Laboratory on 2018 Jul 27

Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex. J Mol Biol 431(19):3647-3661 (2019)
Kim JH, Kim BH, Brooks S, Kang SY, Summers RM, Song HK

R_g^Guinier	5.6	nm
D_max	19.1	nm

SASDFC6 – Wild type protein kinase YopO

Protein kinase YopO experimental SAS data

Sample:	Protein kinase YopO monomer, 63 kDa Yersinia enterocolitica protein
Buffer:	10 mM Tris-HCl, 50 mM NaCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2017 May 6

Studying Conformational Changes of the Yersinia Type-III-Secretion Effector YopO in Solution by Integrative Structural Biology. Structure 27(9):1416-1426.e3 (2019)
Peter MF, Tuukkanen AT, Heubach CA, Selsam A, Duthie FG, Svergun DI, Schiemann O, Hagelueken G

R_g^Guinier	3.3	nm
D_max	11.5	nm
Volume^Porod	119	nm³

SASDFD6 – Protein kinase YopO - cytoplasmic 1 actin complex

Protein kinase YopOActin, cytoplasmic 1 experimental SAS data

Sample:	Protein kinase YopO monomer, 63 kDa Yersinia enterocolitica protein Actin, cytoplasmic 1 monomer, 42 kDa Homo sapiens protein
Buffer:	10 mM Tris-HCl, 50 mM NaCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2017 May 6

R_g^Guinier	3.6	nm
D_max	12.3	nm
Volume^Porod	147	nm³

SASDF24 – Full-length X-chromosome linked inhibitor of apoptosis protein (XIAP)

E3 ubiquitin-protein ligase XIAP experimental SAS data

Sample:	E3 ubiquitin-protein ligase XIAP dimer, 113 kDa Homo sapiens protein
Buffer:	Xiap buffer, pH: 7.4
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2017 Sep 15

Conformational characterization of full-length X-chromosome-linked inhibitor of apoptosis protein (XIAP) through an integrated approach. IUCrJ 6(Pt 5):948-957 (2019)
Polykretis P, Luchinat E, Bonucci A, Giachetti A, Graewert MA, Svergun DI, Banci L

R_g^Guinier	3.9	nm
D_max	12.8	nm
Volume^Porod	207	nm³

SASDGY4 – Beta-amylase 2, chloroplastic (AtBAM2)

Beta-amylase 2, chloroplastic experimental SAS data

Sample:	Beta-amylase 2, chloroplastic tetramer, 229 kDa Arabidopsis thaliana protein
Buffer:	50 mM HEPES, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Jun 11

Solution structure and assembly of β-amylase2 from Arabidopsis thaliana (2019)
Chandrasekharan N, Ravenburg C, Roy I, Monroe J, Berndsen C

R_g^Guinier	4.2	nm
D_max	12.6	nm
Volume^Porod	308	nm³

SASDGZ4 – Beta-amylase 2, chloroplastic (AtBAM2) Ndel1

Beta-amylase 2, chloroplastic Kratky plot

Sample:	Beta-amylase 2, chloroplastic tetramer, 215 kDa Arabidopsis thaliana protein
Buffer:	50 mM HEPES, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Jun 11

Solution structure and assembly of β-amylase2 from Arabidopsis thaliana (2019)
Chandrasekharan N, Ravenburg C, Roy I, Monroe J, Berndsen C

R_g^Guinier	4.4	nm
D_max	11.0	nm
Volume^Porod	272	nm³

SASDEZ8 – Interleukin-18 receptor accessory protein, IL-18Rβ-ECD

Interleukin-18 receptor accessory protein experimental SAS data

Sample:	Interleukin-18 receptor accessory protein monomer, 41 kDa Homo sapiens protein
Buffer:	10mM HEPES, 150mM NaCl, 3% glycerol, pH: 7.2
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2017 Jul 24

Functional Relevance of Interleukin-1 Receptor Inter-domain Flexibility for Cytokine Binding and Signaling. Structure 27(8):1296-1307.e5 (2019)
Ge J, Remesh SG, Hammel M, Pan S, Mahan AD, Wang S, Wang X

R_g^Guinier	3.3	nm
D_max	11.5	nm
Volume^Porod	70	nm³

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