Browse by MACROMOLECULE type: protein

SASDU39 – Nearly full-length monomeric Human Ubiquitin carboxyl-terminal hydrolase 8 (USP8) (7-1110)

Ubiquitin carboxyl-terminal hydrolase 8 experimental SAS data
DAMMIF model
Sample: Ubiquitin carboxyl-terminal hydrolase 8 monomer, 127 kDa Homo sapiens protein
Buffer: 25 mM Tris, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jun 18
Autoinhibition of ubiquitin-specific protease 8: insights into domain interactions and mechanisms of regulation Journal of Biological Chemistry :107727 (2024)
Caba C, Black M, Liu Y, DaDalt A, Mallare J, Fan L, Harding R, Wang Y, Vacratsis P, Huang R, Zhuang Z, Tong Y
RgGuinier 8.4 nm
Dmax 31.8 nm
VolumePorod 327 nm3

SASDUF2 – Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein (P-Rex1-DH/PH-DEP1 (WT))

Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein experimental SAS data
EOM/RANCH model
Sample: Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein monomer, 54 kDa Homo sapiens protein
Buffer: 20 mM HEPES pH 7, 300 mM NaCl, 2% glycerol, 2 mM DTT, pH: 7
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Oct 8
Structural and dynamic changes in P-Rex1 upon activation by PIP3 and inhibition by IP4 eLife 12 (2024)
Ravala S, Adame-Garcia S, Li S, Chen C, Cianfrocco M, Silvio Gutkind J, Cash J, Tesmer J
RgGuinier 3.0 nm
Dmax 9.7 nm
VolumePorod 79 nm3

SASDUG2 – Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein A170K mutant (P-Rex1-DH/PH-DEP1-A170K)

Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein (A170K) experimental SAS data
EOM/RANCH model
Sample: Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein (A170K) monomer, 54 kDa Homo sapiens protein
Buffer: 20 mM HEPES pH 7, 300 mM NaCl, 2% glycerol, 2 mM DTT, pH: 7
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Nov 24
Structural and dynamic changes in P-Rex1 upon activation by PIP3 and inhibition by IP4 eLife 12 (2024)
Ravala S, Adame-Garcia S, Li S, Chen C, Cianfrocco M, Silvio Gutkind J, Cash J, Tesmer J
RgGuinier 2.9 nm
Dmax 9.0 nm
VolumePorod 76 nm3

SASDUH2 – Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein L177E mutant (P-Rex1-DH/PH-DEP1-L177E)

Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein (L177E) experimental SAS data
EOM/RANCH model
Sample: Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein (L177E) monomer, 54 kDa Homo sapiens protein
Buffer: 20 mM HEPES pH 7, 300 mM NaCl, 2% glycerol, 2 mM DTT, pH: 7
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Oct 8
Structural and dynamic changes in P-Rex1 upon activation by PIP3 and inhibition by IP4 eLife 12 (2024)
Ravala S, Adame-Garcia S, Li S, Chen C, Cianfrocco M, Silvio Gutkind J, Cash J, Tesmer J
RgGuinier 3.1 nm
Dmax 11.0 nm
VolumePorod 88 nm3

SASDUJ2 – Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein I409A mutant (P-Rex1-DH/PH-DEP1-I409A)

Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein (I409A) experimental SAS data
EOM/RANCH model
Sample: Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein (I409A) monomer, 54 kDa Homo sapiens protein
Buffer: 20 mM HEPES pH 7, 300 mM NaCl, 2% glycerol, 2 mM DTT, pH: 7
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Oct 8
Structural and dynamic changes in P-Rex1 upon activation by PIP3 and inhibition by IP4 eLife 12 (2024)
Ravala S, Adame-Garcia S, Li S, Chen C, Cianfrocco M, Silvio Gutkind J, Cash J, Tesmer J
RgGuinier 3.0 nm
Dmax 10.4 nm
VolumePorod 79 nm3

SASDVV2 – Fas-activated serine/threonine kinase/phosphoprotein FASTK (76-549)

Fas-activated serine/threonine kinase (amino acids 76-549) experimental SAS data
Sample: Fas-activated serine/threonine kinase (amino acids 76-549) monomer, 53 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 5% (v/v) Glycerol, 200 mM Ammonium Sulphate, 50 mM NaCl, 0.5 mM TCEP, 10 mM Glutamic acid, 10 mM Arginine;, pH: 8.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2020 Jan 31
Human FASTK protein
Daria Dawidziak
RgGuinier 3.6 nm
Dmax 16.3 nm
VolumePorod 96 nm3

SASDVW2 – Fas-activated serine/threonine kinase/phosphoprotein FASTK (169-549)

Fas-activated serine/threonine kinase (amino acids 169-549) experimental SAS data
Sample: Fas-activated serine/threonine kinase (amino acids 169-549) monomer, 43 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 5% (v/v) Glycerol, 200 mM Ammonium Sulphate, 50 mM NaCl, 0.5 mM TCEP, 10 mM Glutamic acid, 10 mM Arginine;, pH: 8.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2020 Jan 31
Human FASTK protein
Daria Dawidziak
RgGuinier 2.8 nm
Dmax 12.0 nm
VolumePorod 67 nm3

SASDTW7 – Heterogeneous nuclear ribonucleoprotein A1-A (hnRNP A1-A; SEC-SAXS, July 2022)

Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 (C43S/C175S) experimental SAS data
Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 (C43S/C175S) Kratky plot
Sample: Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 (C43S/C175S) monomer, 34 kDa Homo sapiens protein
Buffer: 100 mM HEPES, 350 mM NaCl, 0.5 mM EDTA, pH: 7.5
Experiment: SAXS data collected at 12-ID-B, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 7
Thermodynamic coupling of the tandem RRM domains of hnRNP A1 underlie its pleiotropic RNA binding functions. Sci Adv 10(28):eadk6580 (2024)
Levengood JD, Potoyan D, Penumutchu S, Kumar A, Zhou Q, Wang Y, Hansen AL, Kutluay S, Roche J, Tolbert BS
RgGuinier 2.9 nm
Dmax 12.0 nm
VolumePorod 54 nm3

SASDTX7 – Heterogeneous nuclear ribonucleoprotein A1-A (hnRNP A1-A; SEC-SAXS, Sept 2022)

Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 (C43S/C175S) experimental SAS data
Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 (C43S/C175S) Kratky plot
Sample: Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 (C43S/C175S) monomer, 34 kDa Homo sapiens protein
Buffer: 100 mM HEPES, 350 mM NaCl, 0.5 mM EDTA, pH: 7.5
Experiment: SAXS data collected at 12-ID-B, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Sep 27
Thermodynamic coupling of the tandem RRM domains of hnRNP A1 underlie its pleiotropic RNA binding functions. Sci Adv 10(28):eadk6580 (2024)
Levengood JD, Potoyan D, Penumutchu S, Kumar A, Zhou Q, Wang Y, Hansen AL, Kutluay S, Roche J, Tolbert BS
RgGuinier 2.9 nm
Dmax 12.0 nm
VolumePorod 53 nm3

SASDTY7 – Heterogeneous nuclear ribonucleoprotein A1-A (hnRNP A1-A) at 0.1 MPa

Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 (C43S/C175S) experimental SAS data
Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 (C43S/C175S) Kratky plot
Sample: Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1 (C43S/C175S) monomer, 34 kDa Homo sapiens protein
Buffer: 100 mM HEPES, 350 mM NaCl, 0.5 mM EDTA, pH: 7.5
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2023 Mar 1
Thermodynamic coupling of the tandem RRM domains of hnRNP A1 underlie its pleiotropic RNA binding functions. Sci Adv 10(28):eadk6580 (2024)
Levengood JD, Potoyan D, Penumutchu S, Kumar A, Zhou Q, Wang Y, Hansen AL, Kutluay S, Roche J, Tolbert BS
RgGuinier 2.9 nm