Browse by MACROMOLECULE type: protein

SASDT92 – Prion-like domain of 29 kDa chloroplastic ribonucleoprotein measured at at 298 K from Arabidopsis thaliana (Mouse-ear cress)

29 kDa ribonucleoprotein, chloroplastic experimental SAS data
29 kDa ribonucleoprotein, chloroplastic Kratky plot
Sample: 29 kDa ribonucleoprotein, chloroplastic monomer, 8 kDa Arabidopsis thaliana protein
Buffer: 20 mM sodium phosphate, 30 mM NaCl, pH: 6.2
Experiment: SAXS data collected at Rigaku BioSAXS-1000, SFB 1035, Technische Universität München on 2021 Oct 19
A prion-like domain is required for phase separation and chloroplast RNA processing during cold acclimation in Arabidopsis. Plant Cell (2024)
Legen J, Lenzen B, Kachariya N, Feltgen S, Gao Y, Mergenthal S, Weber W, Klotzsch E, Zoschke R, Sattler M, Schmitz-Linneweber C
RgGuinier 2.1 nm
Dmax 9.2 nm
VolumePorod 19 nm3

SASDTA2 – Prion-like domain of 29 kDa chloroplastic ribonucleoprotein measured at at 277 K from Arabidopsis thaliana (Mouse-ear cress)

29 kDa ribonucleoprotein, chloroplastic experimental SAS data
29 kDa ribonucleoprotein, chloroplastic Kratky plot
Sample: 29 kDa ribonucleoprotein, chloroplastic monomer, 8 kDa Arabidopsis thaliana protein
Buffer: 20 mM sodium phosphate, 30 mM NaCl, pH: 6.2
Experiment: SAXS data collected at Rigaku BioSAXS-1000, SFB 1035, Technische Universität München on 2021 Oct 19
A prion-like domain is required for phase separation and chloroplast RNA processing during cold acclimation in Arabidopsis. Plant Cell (2024)
Legen J, Lenzen B, Kachariya N, Feltgen S, Gao Y, Mergenthal S, Weber W, Klotzsch E, Zoschke R, Sattler M, Schmitz-Linneweber C
RgGuinier 2.4 nm
Dmax 11.6 nm
VolumePorod 25 nm3

SASDSK7 – Tandem of WW domains of Pre-mRNA-processing factor 40 homolog A (PRPF40A)

Pre-mRNA-processing factor 40 homolog A experimental SAS data
Pre-mRNA-processing factor 40 homolog A Kratky plot
Sample: Pre-mRNA-processing factor 40 homolog A monomer, 11 kDa Homo sapiens protein
Buffer: 20 mM sodium phosphate, 100 mM NaCl, 0.5 mM DTT, pH: 6.5
Experiment: SAXS data collected at BM29, ESRF on 2020 Sep 19
Intramolecular autoinhibition regulates the selectivity of PRPF40A tandem WW domains for proline-rich motifs. Nat Commun 15(1):3888 (2024)
Martínez-Lumbreras S, Träger LK, Mulorz MM, Payr M, Dikaya V, Hipp C, König J, Sattler M
RgGuinier 2.0 nm
Dmax 6.4 nm
VolumePorod 17 nm3

SASDSL7 – Tandem WW domains of Pre-mRNA-processing factor 40 homolog A (PRPF40A) in complex with Splicing factor 1 (SF1) C-terminal proline repeat

Pre-mRNA-processing factor 40 homolog ASplicing factor 1 experimental SAS data
Pre-mRNA-processing factor 40 homolog A Splicing factor 1 Kratky plot
Sample: Pre-mRNA-processing factor 40 homolog A monomer, 11 kDa Homo sapiens protein
Splicing factor 1 monomer, 2 kDa Homo sapiens protein
Buffer: 20 mM sodium phosphate, 100 mM NaCl, 0.5 mM DTT, pH: 6.5
Experiment: SAXS data collected at BM29, ESRF on 2020 Sep 19
Intramolecular autoinhibition regulates the selectivity of PRPF40A tandem WW domains for proline-rich motifs. Nat Commun 15(1):3888 (2024)
Martínez-Lumbreras S, Träger LK, Mulorz MM, Payr M, Dikaya V, Hipp C, König J, Sattler M
RgGuinier 1.9 nm
Dmax 6.9 nm
VolumePorod 19 nm3

SASDUH4 – Tandem of WW domains of Pre-mRNA-processing factor 40 homolog A (PRPF40A) in HEPES buffer

Pre-mRNA-processing factor 40 homolog A experimental SAS data
Pre-mRNA-processing factor 40 homolog A Kratky plot
Sample: Pre-mRNA-processing factor 40 homolog A monomer, 11 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 100 mM NaCl, 1 mM DTT, pH: 6.6
Experiment: SAXS data collected at Rigaku BioSAXS-1000, Technische Universität München on 2024 Mar 8
Intramolecular autoinhibition regulates the selectivity of PRPF40A tandem WW domains for proline-rich motifs. Nat Commun 15(1):3888 (2024)
Martínez-Lumbreras S, Träger LK, Mulorz MM, Payr M, Dikaya V, Hipp C, König J, Sattler M
RgGuinier 2.0 nm
Dmax 6.3 nm
VolumePorod 18 nm3

SASDUJ4 – Tandem of WW domains of Pre-mRNA-processing factor 40 homolog A (PRPF40A) in complex with Splicing factor 1 (SF1) in HEPES buffer

Pre-mRNA-processing factor 40 homolog ASplicing factor 1 experimental SAS data
Pre-mRNA-processing factor 40 homolog A Splicing factor 1 Kratky plot
Sample: Pre-mRNA-processing factor 40 homolog A monomer, 11 kDa Homo sapiens protein
Splicing factor 1 monomer, 2 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 100 mM NaCl, 1 mM DTT, pH: 6.6
Experiment: SAXS data collected at Rigaku BioSAXS-1000, Technische Universität München on 2024 Mar 8
Intramolecular autoinhibition regulates the selectivity of PRPF40A tandem WW domains for proline-rich motifs. Nat Commun 15(1):3888 (2024)
Martínez-Lumbreras S, Träger LK, Mulorz MM, Payr M, Dikaya V, Hipp C, König J, Sattler M
RgGuinier 1.9 nm
Dmax 6.0 nm
VolumePorod 19 nm3

SASDPE3 – GST-Endonuclease 8 2/Single-stranded DNA-binding protein (Nei2-SSB) complex

Endonuclease 8 2Single-stranded DNA-binding protein experimental SAS data
DAMMIF model
Sample: Endonuclease 8 2 dimer, 108 kDa Mycobacterium tuberculosis (strain … protein
Single-stranded DNA-binding protein octamer, 139 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 20 mM Tris, 100 mM NaCl, pH: 8
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2019 Jul 10
Identification and characterization of MtbNei2-SSB forms novel pre-replicative BER complex in Mycobacterium tuberculosis.
Jyoti Vishwakarma
RgGuinier 5.5 nm
Dmax 21.0 nm
VolumePorod 734 nm3

SASDQZ7 – Ubiquitin-specific protease 14 (USP14)

Ubiquitin carboxyl-terminal hydrolase 14 experimental SAS data
OTHER [STATIC IMAGE] model
Sample: Ubiquitin carboxyl-terminal hydrolase 14 monomer, 56 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM TCEP, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Oct 18
Transient interdomain interactions in free USP14 shape its conformational ensemble. Protein Sci 33(5):e4975 (2024)
Salomonsson J, Wallner B, Sjöstrand L, D'Arcy P, Sunnerhagen M, Ahlner A
RgGuinier 3.1 nm
Dmax 12.5 nm
VolumePorod 111 nm3

SASDQ28 – Catalytic domain of ubiquitin-specific protease 14 (USP14)

Ubiquitin carboxyl-terminal hydrolase 14 experimental SAS data
DAMMIN model
Sample: Ubiquitin carboxyl-terminal hydrolase 14 monomer, 46 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM TCEP, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Jul 5
Transient interdomain interactions in free USP14 shape its conformational ensemble. Protein Sci 33(5):e4975 (2024)
Salomonsson J, Wallner B, Sjöstrand L, D'Arcy P, Sunnerhagen M, Ahlner A
RgGuinier 2.6 nm
Dmax 8.3 nm
VolumePorod 88 nm3

SASDU93 – multimodular GH16_3 containing a CBM and a catalytic domain

Glycosyl hydrolase, family 16 experimental SAS data
DADIMODO model
Sample: Glycosyl hydrolase, family 16 monomer, 58 kDa Christiangramia forsetii (strain … protein
Buffer: 10 mM MOPS, 100 mM NaCl, pH: 7.8
Experiment: SAXS data collected at SWING, SOLEIL on 2022 Dec 1
Unveiling the role of novel carbohydrate-binding modules in laminarin interaction of multimodular proteins from marine Bacteroidota during phytoplankton blooms. Environ Microbiol 26(5):e16624 (2024)
Zühlke MK, Ficko-Blean E, Bartosik D, Terrapon N, Jeudy A, Jam M, Wang F, Welsch N, Dürwald A, Martin LT, Larocque R, Jouanneau D, Eisenack T, Thomas F, Trautwein-Schult A, Teeling H, Becher D, Schweder T, Czjzek M
RgGuinier 3.8 nm
Dmax 12.9 nm
VolumePorod 76 nm3