Browse by ORGANISM: other species

SASDCK6 – Sheath tail protein (DSY3957) from Desulfitobacterium hafniense, Northeast Structural Genomics Consortium Target DhR18

Uncharacterized protein experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Uncharacterized protein monomer, 48 kDa Desulfitobacterium hafniense protein
Buffer: 5 mM DTT 100 mM NaCl 10 mM Tris-HCl 0.02 % NaN3, pH: 7.5
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2010 Feb 12
Small angle X-ray scattering as a complementary tool for high-throughput structural studies. Biopolymers 95(8):517-30 (2011)
Grant TD, Luft JR, Wolfley JR, Tsuruta H, Martel A, Montelione GT, Snell EH
RgGuinier 2.8 nm
Dmax 9.9 nm
VolumePorod 66 nm3

SASDLF3 – Staphylococcal immunoglobulin-binding protein bound to complement component C3

Protein A experimental SAS data
DAMMIN model
Sample: Protein A monomer, 28 kDa Staphylococcus aureus protein
Buffer: 10 mM HEPES, pH 7.2, 3 mM EDTA, pH: 7.2
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2005 May 12
A structural basis for Staphylococcal complement subversion: X-ray structure of the complement-binding domain of Staphylococcus aureus protein Sbi in complex with ligand C3d Molecular Immunology 48(4):452-462 (2011)
Clark E, Crennell S, Upadhyay A, Zozulya A, Mackay J, Svergun D, Bagby S, van den Elsen J
RgGuinier 4.6 nm
Dmax 16.0 nm
VolumePorod 81 nm3

SASDC56 – Blue light receptor YtvA, dark/inactive state

pfyP - Blue light photoreceptor experimental SAS data
GASBOR model
Sample: PfyP - Blue light photoreceptor dimer, 58 kDa Bacillus subtilis protein
Buffer: PBS + 5 mM DTT, pH: 7.4
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2009 Oct 24
The switch that does not flip: the blue-light receptor YtvA from Bacillus subtilis adopts an elongated dimer conformation independent of the activation state as revealed by a combined AUC and SAXS study. J Mol Biol 403(1):78-87 (2010)
Jurk M, Dorn M, Kikhney A, Svergun D, Gärtner W, Schmieder P
RgGuinier 3.2 nm
Dmax 10.1 nm
VolumePorod 75 nm3

SASDC66 – Blue light receptor YtvA, lit/active state

pfyP - Blue light photoreceptor experimental SAS data
GASBOR model
Sample: PfyP - Blue light photoreceptor dimer, 58 kDa Bacillus subtilis protein
Buffer: PBS + 5 mM DTT, pH: 7.4
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2009 Oct 24
The switch that does not flip: the blue-light receptor YtvA from Bacillus subtilis adopts an elongated dimer conformation independent of the activation state as revealed by a combined AUC and SAXS study. J Mol Biol 403(1):78-87 (2010)
Jurk M, Dorn M, Kikhney A, Svergun D, Gärtner W, Schmieder P
RgGuinier 3.2 nm
Dmax 10.1 nm
VolumePorod 74 nm3

SASDD35 – Nanodiscs with membrane scaffold protein 1D1 (MSP1D1) and dilaurylphosphatidyl choline (DLPC)

Membrane scaffold protein 1D1 experimental SAS data
Sample: Membrane scaffold protein 1D1 dimer, 50 kDa unidentified protein
Buffer: 20 mM Tris, 100 mM NaCl, 100 mM sodium cholate,, pH: 7.4
Experiment: SAXS data collected at ID14-3, ESRF on 2009 Nov 14
Elliptical structure of phospholipid bilayer nanodiscs encapsulated by scaffold proteins: casting the roles of the lipids and the protein. J Am Chem Soc 132(39):13713-22 (2010)
Skar-Gislinge N, Simonsen JB, Mortensen K, Feidenhans'l R, Sligar SG, Lindberg Møller B, Bjørnholm T, Arleth L
RgGuinier 4.9 nm
Dmax 12.2 nm

SASDND2 – The monomeric state of b-sandwich cupredoxin Plastocyanin (Pc)

Plastocyanin experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Plastocyanin monomer, 11 kDa Phormidium laminosum protein
Buffer: pure water, pH: 7
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2009 May 7
Metal-Mediated Self-Assembly of a β-Sandwich Protein Chemistry - A European Journal 15(46):12672-12680 (2009)
Crowley P, Matias P, Khan A, Roessle M, Svergun D
RgGuinier 1.4 nm
Dmax 4.5 nm
VolumePorod 15 nm3

SASDNE2 – The dimeric state of b-sandwich cupredoxin Plastocyanin (Pc)

Plastocyanin experimental SAS data
REFMAC model
Sample: Plastocyanin dimer, 23 kDa Phormidium laminosum protein
Buffer: pure water, pH: 7
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2009 May 7
Metal-Mediated Self-Assembly of a β-Sandwich Protein Chemistry - A European Journal 15(46):12672-12680 (2009)
Crowley P, Matias P, Khan A, Roessle M, Svergun D
RgGuinier 2.3 nm
Dmax 8.5 nm
VolumePorod 28 nm3

SASDNV2 – The pro-convertase formed by human FB and cobra venom factor (CVF)

Cobra venom factor experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Cobra venom factor monomer, 185 kDa Naja kaouthia protein
Buffer: 10 mM Tris 5 mM MgCl2 10 mM NaCl, pH: 7.4
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2007 Dec 19
Insights into complement convertase formation based on the structure of the factor B-cobra venom factor complex The EMBO Journal 28(16):2469-2478 (2009)
Janssen B, Gomes L, Koning R, Svergun D, Koster A, Fritzinger D, Vogel C, Gros P
RgGuinier 4.6 nm
Dmax 15.0 nm
VolumePorod 384 nm3

SASDM73 – Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 0%)

Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 0%) experimental SAS data
DAMMIN model
Sample: Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 0%) heptamer, 2 kDa
Buffer: water-ethanol solution (water fraction 0%), pH: 7
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2007 Nov 24
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution. J Chem Phys 130(24):245103 (2009)
Zanchi D, Konarev PV, Tribet C, Baron A, Svergun DI, Guyot S
RgGuinier 1.0 nm
Dmax 3.5 nm

SASDM83 – Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 60%)

Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 60%) experimental SAS data
DAMMIN model
Sample: Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 60%) heptamer, 2 kDa
Buffer: water-ethanol solution (water fraction 60%), pH: 7
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2007 Nov 24
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution. J Chem Phys 130(24):245103 (2009)
Zanchi D, Konarev PV, Tribet C, Baron A, Svergun DI, Guyot S
RgGuinier 1.0 nm
Dmax 3.2 nm