Small Angle Scattering Biological Data Bank SASBDB

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SASDUN5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - IMP-bound form

Inosine-5'-monophosphate dehydrogenase experimental SAS data

Sample:	Inosine-5'-monophosphate dehydrogenase tetramer, 213 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Mar 6

Deciphering the allosteric regulation of mycobacterial inosine-5′-monophosphate dehydrogenase Nature Communications 15(1) (2024)
Bulvas O, Knejzlík Z, Sýs J, Filimoněnko A, Čížková M, Clarová K, Rejman D, Kouba T, Pichová I

R_g^Guinier	5.0	nm
D_max	21.5	nm
Volume^Porod	471	nm³

SASDUP5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - ATP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Jan 29

R_g^Guinier	5.0	nm
D_max	14.8	nm
Volume^Porod	821	nm³

SASDUQ5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - ATP+IMP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Mar 6

R_g^Guinier	5.1	nm
D_max	13.2	nm
Volume^Porod	784	nm³

SASDUR5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - GTP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Mar 6

R_g^Guinier	5.0	nm
D_max	14.4	nm
Volume^Porod	810	nm³

SASDVF2 – Staphylococcal extracellular adherence protein (Eap) in unbound form

Sample:	Protein map monomer, 50 kDa Staphylococcus aureus (strain … protein
Buffer:	20 mM HEPES, 140 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 Jun 3

S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases. J Biol Chem 300(9):107627 (2024)
Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV

R_g^Guinier	4.0	nm
Volume^Porod	64	nm³

SASDVN2 – S.aureus Protein Map Eap3 and Eap4 domains (Δ266-476)

Sample:	Protein map monomer, 24 kDa Staphylococcus aureus (strain … protein
Buffer:	20 mM HEPES, 140 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 Nov 17

S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases. J Biol Chem 300(9):107627 (2024)
Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV

R_g^Guinier	2.5	nm
D_max	8.5	nm
Volume^Porod	28	nm³

SASDR98 – The BTB domain (wild-type) of the zinc finger and BTB domain-containing protein 8A.1-A (ZBTB8a) from Xenopus laevis

Zinc finger and BTB domain-containing protein 8A.1-A experimental SAS data

Zinc finger and BTB domain-containing protein 8A.1-A Kratky plot

Sample:	Zinc finger and BTB domain-containing protein 8A.1-A dimer, 35 kDa Xenopus laevis protein
Buffer:	20 mM Hepes, 150 mM NaCl, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at SWING, SOLEIL on 2022 Dec 4

Dynamic BTB-domain filaments promote clustering of ZBTB proteins. Mol Cell 84(13):2490-2510.e9 (2024)
Mance L, Bigot N, Zhamungui Sánchez E, Coste F, Martín-González N, Zentout S, Biliškov M, Pukało Z, Mishra A, Chapuis C, Arteni AA, Lateur A, Goffinont S, Gaudon V, Talhaoui I, Casuso I, Beaufour M, Garnier N, Artzner F, Cadene M, Huet S, Castaing B, Suskiewicz MJ

R_g^Guinier	22.3	nm
D_max	99.6	nm

SASDRA8 – The BTB domain (S103R mutant) of the zinc finger and BTB domain-containing protein 8A.1-A (ZBTB8a) from Xenopus laevis

Zinc finger and BTB domain-containing protein 8A.1-A (S103R mutant) experimental SAS data

Zinc finger and BTB domain-containing protein 8A.1-A (S103R mutant) Kratky plot

Sample:	Zinc finger and BTB domain-containing protein 8A.1-A (S103R mutant) dimer, 35 kDa Xenopus laevis protein
Buffer:	20 mM Hepes, 150 mM NaCl, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at SWING, SOLEIL on 2022 Dec 4

R_g^Guinier	3.3	nm
D_max	12.8	nm
Volume^Porod	60	nm³

SASDUB4 – Urate Oxidase Updated Consensus SAXS Data

Sample:	Uricase tetramer, 136 kDa Aspergillus flavus protein
Buffer:	100 mM Tris, 150 mM NaCl, pH: 8
Experiment:	SANS data collected at (Consensus SAS), Multi-facility, Multiple countries on 2024 Feb 4

Benchmarking predictive methods for small-angle X-ray scattering from atomic coordinates of proteins using maximum likelihood consensus data IUCrJ 11(5) (2024)
Trewhella J, Vachette P, Larsen A

R_g^Guinier	3.2	nm
D_max	9.3	nm

SASDUC4 – Xylose Isomerase Updated Consensus SAXS Data

Sample:	Xylose isomerase tetramer, 173 kDa Streptomyces rubiginosus protein
Buffer:	50 mM Tris, 100 mM NaCl, 1 mM MgCl2, pH: 7.5
Experiment:	SANS data collected at (Consensus SAS), Multi-facility, Multiple countries on 2024 Feb 4

Benchmarking predictive methods for small-angle X-ray scattering from atomic coordinates of proteins using maximum likelihood consensus data IUCrJ 11(5) (2024)
Trewhella J, Vachette P, Larsen A

R_g^Guinier	3.3	nm
D_max	10.1	nm

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