Browse by ORGANISM: other species

SASDL38 – The Fe–S cluster assembly 1 homolog of pigeon (6.9 mg/ml), Total X-ray exposure time : 4min

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Jun 8
Radiation resistivity of clISCA1
Shigeki Arai
RgGuinier 2.7 nm

SASDL48 – The Fe–S cluster assembly 1 homolog of pigeon (6.9 mg/ml), Total X-ray exposure time : 5min

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Jun 8
Radiation resistivity of clISCA1
Shigeki Arai
RgGuinier 2.7 nm

SASDSU5 – Histidine-phosphotransferase from Candida albicans

Phosphorelay intermediate protein YPD1 experimental SAS data
SASREF model
Sample: Phosphorelay intermediate protein YPD1 monomer, 19 kDa Candida albicans (strain … protein
Buffer: 50 mM Tris-HCl pH 8, 300 mM NaCl, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2022 Oct 10
Structural and functional insights underlying recognition of histidine phosphotransfer protein in fungal phosphorelay systems Communications Biology 7(1) (2024)
Paredes-Martínez F, Eixerés L, Zamora-Caballero S, Casino P
RgGuinier 2.5 nm
Dmax 11.5 nm
VolumePorod 33 nm3

SASDUV2 – MBP-fused Schistosoma mansoni Septin-10 C-terminal coiled-coil domain (MBP-SmSEPT10C)

Septin-10 experimental SAS data
OMEGAFOLD model
Sample: Septin-10 dimer, 110 kDa Schistosoma mansoni protein
Buffer: 50 mM Tris, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2023 May 17
Novel lipid-interaction motifs within the C-terminal domain of Septin10 from Schistosoma mansoni Biochimica et Biophysica Acta (BBA) - Biomembranes :184371 (2024)
Cavini I, Fontes M, Zeraik A, Lopes J, Araújo A
RgGuinier 5.7 nm
Dmax 27.4 nm
VolumePorod 175 nm3

SASDUV3 – SAXS analysis of the LrpA backbone-Pilin Subunit from Ligilactobacillus ruminis

LPXTG-motif cell wall anchor domain protein experimental SAS data
ALPHAFOLD model
Sample: LPXTG-motif cell wall anchor domain protein monomer, 49 kDa Ligilactobacillus ruminis ATCC … protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Nov 1
The crystal structure of the N-terminal domain of the backbone pilin LrpA reveals a new closure-and-twist motion for assembling dynamic pili in Ligilactobacillus ruminis Acta Crystallographica Section D Structural Biology 80(7):474-492 (2024)
Prajapati A, Palva A, von Ossowski I, Krishnan V
RgGuinier 3.5 nm
Dmax 10.6 nm
VolumePorod 59 nm3

SASDLF7 – The Fe–S cluster assembly 1 homolog of pigeon (clISCA1) without the magnetic circuit

Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Pigeon iron-sulfur cluster assembly 1 homolog (clISCA1) 29.3 mg/ml
Shigeki Arai
RgGuinier 4.5 nm
Dmax 15.8 nm
VolumePorod 130 nm3

SASDUW6 – Alarmin release inhibitor (HpARI2), full-length

Alarmin release inhibitor (Δ1-62) experimental SAS data
DAMMIF model
Sample: Alarmin release inhibitor (Δ1-62) monomer, 26 kDa Heligmosomoides polygyrus protein
Buffer: 137 mM NaCl, 2.7 mM KCl, 10 mM phosphate buffer, 5% glycerol, pH: 7.2
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Feb 9
Structural basis for IL-33 recognition and its antagonism by the helminth effector protein HpARI2. Nat Commun 15(1):5226 (2024)
Jamwal A, Colomb F, McSorley HJ, Higgins MK
RgGuinier 2.6 nm
Dmax 9.9 nm
VolumePorod 31 nm3

SASDUX6 – Alarmin release inhibitor (HpARI2) domains CCP2 and CCP3

Alarmin release inhibitor (Δ1-125; N175Q, N190Q) experimental SAS data
DAMMIF model
Sample: Alarmin release inhibitor (Δ1-125; N175Q, N190Q) monomer, 19 kDa Heligmosomoides polygyrus protein
Buffer: 137 mM NaCl, 2.7 mM KCl, 10 mM phosphate buffer, 5% glycerol, pH: 7.2
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Feb 9
Structural basis for IL-33 recognition and its antagonism by the helminth effector protein HpARI2. Nat Commun 15(1):5226 (2024)
Jamwal A, Colomb F, McSorley HJ, Higgins MK
RgGuinier 2.3 nm
Dmax 8.2 nm
VolumePorod 28 nm3

SASDUG7 – Wild type Lcl C-terminal domain

HbP1 experimental SAS data
HbP1 Kratky plot
Sample: HbP1 trimer, 56 kDa Legionella pneumophila protein
Buffer: 20 mM Tris–HCl pH 8.0, 200 mM NaCl, 5 mM EDTA, pH:
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Jul 29
The Legionella collagen-like protein employs a distinct binding mechanism for the recognition of host glycosaminoglycans. Nat Commun 15(1):4912 (2024)
Rehman S, Antonovic AK, McIntire IE, Zheng H, Cleaver L, Baczynska M, Adams CO, Portlock T, Richardson K, Shaw R, Oregioni A, Mastroianni G, Whittaker SB, Kelly G, Lorenz CD, Fornili A, Cianciotto NP, Garnett JA
RgGuinier 2.8 nm
Dmax 9.7 nm
VolumePorod 105 nm3

SASDUH7 – Lcl C-terminal domain R477A mutant - trimer

HbP1 (R477A) experimental SAS data
HbP1 (R477A) Kratky plot
Sample: HbP1 (R477A) trimer, 55 kDa Legionella pneumophila protein
Buffer: 20 mM Tris–HCl pH 8.0, 200 mM NaCl, 5 mM EDTA, pH:
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Jul 29
The Legionella collagen-like protein employs a distinct binding mechanism for the recognition of host glycosaminoglycans. Nat Commun 15(1):4912 (2024)
Rehman S, Antonovic AK, McIntire IE, Zheng H, Cleaver L, Baczynska M, Adams CO, Portlock T, Richardson K, Shaw R, Oregioni A, Mastroianni G, Whittaker SB, Kelly G, Lorenz CD, Fornili A, Cianciotto NP, Garnett JA
RgGuinier 2.7 nm
Dmax 9.4 nm
VolumePorod 79 nm3