Small Angle Scattering Biological Data Bank SASBDB

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SASDV65 – The light-adapted AsLOV2 domain (Avena sativa, Oat)

non-specific serine/threonine protein kinase experimental SAS data

non-specific serine/threonine protein kinase Kratky plot

Sample:	Non-specific serine/threonine protein kinase dimer, 33 kDa Avena sativa protein
Buffer:	20 mM Tris, 200 mM NaCl, pH: 7
Experiment:	SAXS data collected at 4C, Pohang Accelerator Laboratory on 2021 May 15

Structural dynamics of protein-protein association involved in the light-induced transition of Avena sativa LOV2 protein. Nat Commun 15(1):6991 (2024)
Kim C, Yun SR, Lee SJ, Kim SO, Lee H, Choi J, Kim JG, Kim TW, You S, Kosheleva I, Noh T, Baek J, Ihee H

R_g^Guinier	2.3	nm
D_max	8.5	nm
Volume^Porod	51	nm³

SASDUX3 – F-actin in F-buffer at an actin concentration of 2 mg/mL

Actin, cytoplasmic 1 experimental SAS data

Sample:	Actin, cytoplasmic 1 18-mer, 751 kDa Gallus gallus protein
Buffer:	50 mM KCl, 50 mM Tris-HCl, pH 8.0, 5 mM MgCl2, 1 mM ATP, 0.1% 2-mercaptoethanol, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2013 Aug 31

Visualizing the nucleating and capped states of f-actin by Ca(2+)-gelsolin: Saxs data based structures of binary and ternary complexes. Int J Biol Macromol :134556 (2024)
Sagar A, Peddada N, Choudhary V, Mir Y, Garg R, Ashish

R_g^Guinier	13.4	nm
D_max	48.0	nm

SASDS47 – 1-Deoxy-D-xylulose-5-phosphate reductoisomerase (DXR)

1-deoxy-D-xylulose-5-phosphate reductoisomerase (G328C, K361E, S551G) experimental SAS data

1-Deoxy-D-xylulose-5-phosphate reductoisomerase (DXR) Rg histogram

Sample:	1-deoxy-D-xylulose-5-phosphate reductoisomerase (G328C, K361E, S551G) dimer, 104 kDa Toxoplasma gondii (strain … protein
Buffer:	20 mM Tris/HCl, 150 mM NaCl, 40 mM MgCl2, 2% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BM29, ESRF on 2023 Apr 25

1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) as target for anti Toxoplasma gondii agents: crystal structure, biochemical characterisation and biological evaluation of inhibitors Biochemical Journal (2024)
Mazzone F, Hoeppner A, Reiners J, Gertzen C, Applegate V, Abdullaziz M, Gottstein J, Degrandi D, Wesemann M, Kurz T, Smits S, Pfeffer K

R_g^Guinier	3.3	nm
D_max	10.4	nm
Volume^Porod	176	nm³

SASDUM5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - apo form

Inosine-5'-monophosphate dehydrogenase experimental SAS data

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Feb 21

Deciphering the allosteric regulation of mycobacterial inosine-5′-monophosphate dehydrogenase Nature Communications 15(1) (2024)
Bulvas O, Knejzlík Z, Sýs J, Filimoněnko A, Čížková M, Clarová K, Rejman D, Kouba T, Pichová I

R_g^Guinier	5.3	nm
D_max	24.5	nm
Volume^Porod	952	nm³

SASDUN5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - IMP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase tetramer, 213 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Mar 6

R_g^Guinier	5.0	nm
D_max	21.5	nm
Volume^Porod	471	nm³

SASDUP5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - ATP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Jan 29

R_g^Guinier	5.0	nm
D_max	14.8	nm
Volume^Porod	821	nm³

SASDUQ5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - ATP+IMP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Mar 6

R_g^Guinier	5.1	nm
D_max	13.2	nm
Volume^Porod	784	nm³

SASDUR5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - GTP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Mar 6

R_g^Guinier	5.0	nm
D_max	14.4	nm
Volume^Porod	810	nm³

SASDVF2 – Staphylococcal extracellular adherence protein (Eap) in unbound form

Sample:	Protein map monomer, 50 kDa Staphylococcus aureus (strain … protein
Buffer:	20 mM HEPES, 140 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 Jun 3

S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases. J Biol Chem 300(9):107627 (2024)
Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV

R_g^Guinier	4.0	nm
Volume^Porod	64	nm³

SASDVN2 – S.aureus Protein Map Eap3 and Eap4 domains (Δ266-476)

Sample:	Protein map monomer, 24 kDa Staphylococcus aureus (strain … protein
Buffer:	20 mM HEPES, 140 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 Nov 17

S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases. J Biol Chem 300(9):107627 (2024)
Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV

R_g^Guinier	2.5	nm
D_max	8.5	nm
Volume^Porod	28	nm³

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