SASDEX9 – Class II pyruvate aldolase (HpcH/HpaI aldolase), wild-type hexamer in HEPES isolated using SEC-SAXS

HpcH/HpaI aldolase experimental SAS data
GASBOR model
Sample: HpcH/HpaI aldolase hexamer, 165 kDa Rhizorhabdus wittichii RW1 protein
Buffer: 20 mM HEPES,, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Nov 23
EFAMIX , a tool to decompose inline chromatography SAXS data from partially overlapping components Protein Science (2021)
Konarev P, Graewert M, Jeffries C, Fukuda M, Cheremnykh T, Volkov V, Svergun D
RgGuinier 3.3 nm
Dmax 9.4 nm
VolumePorod 233 nm3

SASDMN2 – Mouse Kirrel2 ectodomain

Kin of IRRE-like protein 2 experimental SAS data
Kin of IRRE-like protein 2 Kratky plot
Sample: Kin of IRRE-like protein 2 dimer, 106 kDa Mus musculus protein
Buffer: 10 mM HEPES pH 7.2, 150 mM NaCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Aug 3
Molecular and structural basis of olfactory sensory neuron axon coalescence by Kirrel receptors. Cell Rep 37(5):109940 (2021)
Wang J, Vaddadi N, Pak JS, Park Y, Quilez S, Roman CA, Dumontier E, Thornton JW, Cloutier JF, Özkan E
RgGuinier 8.9 nm
Dmax 39.0 nm

SASDMP2 – Mouse Kirrel3 ectodomain

Kin of IRRE-like protein 3 experimental SAS data
SASREF model
Sample: Kin of IRRE-like protein 3 dimer, 106 kDa Mus musculus protein
Buffer: 10 mM HEPES pH 7.2, 150 mM NaCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Aug 3
Molecular and structural basis of olfactory sensory neuron axon coalescence by Kirrel receptors. Cell Rep 37(5):109940 (2021)
Wang J, Vaddadi N, Pak JS, Park Y, Quilez S, Roman CA, Dumontier E, Thornton JW, Cloutier JF, Özkan E
RgGuinier 9.3 nm
Dmax 34.5 nm

SASDMQ2 – Mouse Kirrel3 ectodomain - Q128A mutant

Kin of IRRE-like protein 3 (Q128A) experimental SAS data
Mouse Kirrel3 ectodomain - Q128A mutant Rg histogram
Sample: Kin of IRRE-like protein 3 (Q128A) monomer, 53 kDa Mus musculus protein
Buffer: 10 mM HEPES pH 7.2, 150 mM NaCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Aug 3
Molecular and structural basis of olfactory sensory neuron axon coalescence by Kirrel receptors. Cell Rep 37(5):109940 (2021)
Wang J, Vaddadi N, Pak JS, Park Y, Quilez S, Roman CA, Dumontier E, Thornton JW, Cloutier JF, Özkan E
RgGuinier 5.4 nm
Dmax 21.3 nm

SASDKU3 – II-III-VI three-way junction from the Neurospora Varkud Satellite (VS) ribozyme

Neurospora Varkud Satellite ribozyme junction II-III-VI experimental SAS data
OTHER model
Sample: Neurospora Varkud Satellite ribozyme junction II-III-VI monomer, 20 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, 5 mM MgCl2,, pH: 6.5
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2014 Oct 29
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 2.2 nm
Dmax 7.7 nm
VolumePorod 28 nm3

SASDKV3 – III-IV-V three-way junction from the Neurospora Varkud Satellite (VS) ribozyme

Neurospora Varkud Satellite ribozyme junction III-IV-V experimental SAS data
OTHER model
Sample: Neurospora Varkud Satellite ribozyme junction III-IV-V monomer, 15 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, 5 mM MgCl2,, pH: 6.5
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2014 Oct 29
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 2.1 nm
Dmax 7.5 nm
VolumePorod 20 nm3

SASDKW3 – Stem-loop VI from the Neurospora Varkud Satellite (VS) ribozyme

Neurospora Varkud Satellite ribozyme stem-loop VI experimental SAS data
OTHER model
Sample: Neurospora Varkud Satellite ribozyme stem-loop VI monomer, 8 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, 5 mM MgCl2,, pH: 6.5
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2015 Jul 7
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 1.6 nm
Dmax 6.1 nm
VolumePorod 8 nm3

SASDKX3 – Minimal trans Varkud Satellite (VS) ribozyme without MgCl2

Neurospora Varkud Satellite minimal trans ribozyme experimental SAS data
Neurospora Varkud Satellite minimal trans ribozyme Kratky plot
Sample: Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, pH: 6.5
Experiment: SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 3.6 nm
Dmax 12.4 nm
VolumePorod 55 nm3

SASDKY3 – Minimal trans Varkud Satellite (VS) ribozyme in 5mM MgCl2

Neurospora Varkud Satellite minimal trans ribozyme experimental SAS data
OTHER model
Sample: Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, 5 mM MgCl2,, pH: 6.5
Experiment: SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 3.0 nm
Dmax 11.0 nm
VolumePorod 44 nm3

SASDKZ3 – Minimal trans Varkud Satellite (VS) ribozyme in 20mM MgCl2

Neurospora Varkud Satellite minimal trans ribozyme experimental SAS data
Neurospora Varkud Satellite minimal trans ribozyme Kratky plot
Sample: Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, 20 mM MgCl2,, pH: 6.5
Experiment: SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 3.5 nm
Dmax 11.4 nm
VolumePorod 61 nm3

4101 hits found.