SASDML5 – Proteoliposomes composed of lipids from A/Puerto Rico/8/34 (H1N1) virus envelope together with the HA LI45 peptides loaded with M1 protein

Proteoliposomes composed of lipids from A/Puerto Rico/8/34 (H1N1) virus envelope together with the HA LI45 peptides loaded with M1 protein (lipid:M1 molar ration 4:1) experimental SAS data
OTHER [STATIC IMAGE] model
Sample: Proteoliposomes composed of lipids from A/Puerto Rico/8/34 (H1N1) virus envelope together with the HA LI45 peptides loaded with M1 protein (lipid:M1 molar ration 4:1) monomer, 2000 kDa
Buffer: 100 mM NaCl, 50 mM MES buffer, pH: 6.8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Nov 26
The Cytoplasmic Tail of Influenza A Virus Hemagglutinin and Membrane Lipid Composition Change the Mode of M1 Protein Association with the Lipid Bilayer Membranes 11(10):772 (2021)
Kordyukova L, Konarev P, Fedorova N, Shtykova E, Ksenofontov A, Loshkarev N, Dadinova L, Timofeeva T, Abramchuk S, Moiseenko A, Baratova L, Svergun D, Batishchev O

SASDJ34 – Human Complex I assembly factor ACAD9 dimer

Complex I assembly factor ACAD9, mitochondrial experimental SAS data
CUSTOM IN-HOUSE model
Sample: Complex I assembly factor ACAD9, mitochondrial dimer, 130 kDa Homo sapiens protein
Buffer: 25mM Tris-HCl, 150mM NaCl, 0.1mM DTT, and 5% glycerol, pH: 8
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2017 Nov 2
Molecular mechanism of interactions between ACAD9 and binding partners in mitochondrial respiratory complex I assembly iScience 24(10):103153 (2021)
Xia C, Lou B, Fu Z, Mohsen A, Shen A, Vockley J, Kim J
RgGuinier 3.5 nm
Dmax 13.0 nm
VolumePorod 213 nm3

SASDJ44 – Human Complex I assembly factor ACAD9 complexed with ECSIT

Complex I assembly factor ACAD9, mitochondrialEvolutionarily conserved signaling intermediate in Toll pathway, mitochondrial experimental SAS data
DAMFILT model
Sample: Complex I assembly factor ACAD9, mitochondrial dimer, 130 kDa Homo sapiens protein
Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial dimer, 93 kDa Homo sapiens protein
Buffer: 25mM Tris-HCl, 150mM NaCl, 0.1mM DTT, and 5% glycerol, pH: 8
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2017 Nov 2
Molecular mechanism of interactions between ACAD9 and binding partners in mitochondrial respiratory complex I assembly iScience 24(10):103153 (2021)
Xia C, Lou B, Fu Z, Mohsen A, Shen A, Vockley J, Kim J
RgGuinier 5.1 nm
Dmax 16.8 nm
VolumePorod 514 nm3

SASDJ54 – Human Complex I assembly factor ACAD9 complexed with ECSIT and SMT3-NDUFAF1

Complex I assembly factor ACAD9, mitochondrialEvolutionarily conserved signaling intermediate in Toll pathway, mitochondrialComplex I intermediate-associated protein 30, mitochondrial experimental SAS data
DAMMIF model
Sample: Complex I assembly factor ACAD9, mitochondrial tetramer, 259 kDa Homo sapiens protein
Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial tetramer, 184 kDa Homo sapiens protein
Complex I intermediate-associated protein 30, mitochondrial tetramer, 190 kDa Homo sapiens protein
Buffer: 25mM Tris-HCl, 150mM NaCl, 0.1mM DTT, and 5% glycerol, pH: 8
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2017 Nov 2
Molecular mechanism of interactions between ACAD9 and binding partners in mitochondrial respiratory complex I assembly iScience 24(10):103153 (2021)
Xia C, Lou B, Fu Z, Mohsen A, Shen A, Vockley J, Kim J
RgGuinier 6.6 nm
Dmax 21.6 nm
VolumePorod 1340 nm3

SASDK46 – Coronin from Trypanosoma brucei brucei (C-terminal coiled coil domain)

Coronin experimental SAS data
GASBOR model
Sample: Coronin tetramer, 21 kDa Trypanosoma brucei brucei … protein
Buffer: 100 mM Tris-HCl, 100 mM NaCl, pH: 7.4
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR - Institute of Microbial Technology (IMTech) on 2019 Oct 17
Structural insights into kinetoplastid coronin oligomerization domain and F-actin interaction Current Research in Structural Biology (2021)
Parihar P, Singh A, Karade S, Sahasrabuddhe A, Pratap J
RgGuinier 3.3 nm
Dmax 12.5 nm
VolumePorod 22 nm3

SASDK56 – Cell cycle associated protein MOB1, putative, from Leishmania donovani

Cell cycle associated protein MOB1, putative experimental SAS data
GASBOR model
Sample: Cell cycle associated protein MOB1, putative monomer, 27 kDa Leishmania donovani (strain … protein
Buffer: 100 mM Tris-HCl, 100 mM NaCl, pH: 7.4
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2017 Jun 22
Structural insights into kinetoplastid coronin oligomerization domain and F-actin interaction Current Research in Structural Biology (2021)
Parihar P, Singh A, Karade S, Sahasrabuddhe A, Pratap J
RgGuinier 2.1 nm
Dmax 5.6 nm
VolumePorod 59 nm3

SASDKV9 – Transcription factors USF1 and NF-Y bound to a CCAAT DNA box(48bp)

Upstream stimulatory factor 1Nuclear transcription factor Y subunit alphaNuclear transcription factor Y subunit betaNuclear transcription factor Y subunit gammaDNA 48bp experimental SAS data
CORAL model
Sample: Upstream stimulatory factor 1 dimer, 50 kDa Homo sapiens protein
Nuclear transcription factor Y subunit alpha monomer, 10 kDa Homo sapiens protein
Nuclear transcription factor Y subunit beta monomer, 11 kDa Homo sapiens protein
Nuclear transcription factor Y subunit gamma monomer, 11 kDa Homo sapiens protein
DNA 48bp monomer, 30 kDa DNA
Buffer: 100 mM cacodylate buffer, pH: 6.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Jun 14
The USR domain of USF1 mediates NF-Y interactions and cooperative DNA binding International Journal of Biological Macromolecules (2021)
Bernardini A, Lorenzo M, Chaves-Sanjuan A, Swuec P, Pigni M, Saad D, Konarev P, Graewert M, Valentini E, Svergun D, Nardini M, Mantovani R, Gnesutta N
RgGuinier 4.8 nm
Dmax 17.0 nm
VolumePorod 155 nm3

SASDKW9 – Transcription factors USF1 and NF-Y bound to a CCAAT DNA box(50bp)

Upstream stimulatory factor 1Nuclear transcription factor Y subunit alphaNuclear transcription factor Y subunit betaNuclear transcription factor Y subunit gammaDNA 50bp experimental SAS data
DAMMIN model
Sample: Upstream stimulatory factor 1 dimer, 50 kDa Homo sapiens protein
Nuclear transcription factor Y subunit alpha monomer, 10 kDa Homo sapiens protein
Nuclear transcription factor Y subunit beta monomer, 11 kDa Homo sapiens protein
Nuclear transcription factor Y subunit gamma monomer, 11 kDa Homo sapiens protein
DNA 50bp monomer, 31 kDa DNA
Buffer: 100 mM cacodylate buffer, pH: 6.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Jun 14
The USR domain of USF1 mediates NF-Y interactions and cooperative DNA binding International Journal of Biological Macromolecules (2021)
Bernardini A, Lorenzo M, Chaves-Sanjuan A, Swuec P, Pigni M, Saad D, Konarev P, Graewert M, Valentini E, Svergun D, Nardini M, Mantovani R, Gnesutta N
RgGuinier 4.8 nm
Dmax 17.0 nm
VolumePorod 165 nm3

SASDKX9 – Transcription factors MAX and NF-Y bound to a CCAAT DNA box(48bp)

Protein max (Isoform 2, short, 13-21: missing)Nuclear transcription factor Y subunit alphaNuclear transcription factor Y subunit betaNuclear transcription factor Y subunit gammaDNA 48bp experimental SAS data
DAMMIN model
Sample: Protein max (Isoform 2, short, 13-21: missing) dimer, 39 kDa Homo sapiens protein
Nuclear transcription factor Y subunit alpha monomer, 10 kDa Homo sapiens protein
Nuclear transcription factor Y subunit beta monomer, 11 kDa Homo sapiens protein
Nuclear transcription factor Y subunit gamma monomer, 11 kDa Homo sapiens protein
DNA 48bp monomer, 30 kDa DNA
Buffer: 100 mM cacodylate buffer, pH: 6.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2012 Dec 10
The USR domain of USF1 mediates NF-Y interactions and cooperative DNA binding International Journal of Biological Macromolecules (2021)
Bernardini A, Lorenzo M, Chaves-Sanjuan A, Swuec P, Pigni M, Saad D, Konarev P, Graewert M, Valentini E, Svergun D, Nardini M, Mantovani R, Gnesutta N
RgGuinier 5.2 nm
Dmax 17.0 nm
VolumePorod 151 nm3

SASDLY4 – Bacillus subtilis diadenylate cyclase CdaA: cytoplasmic domain

Cyclic di-AMP synthase CdaA experimental SAS data
Cyclic di-AMP synthase CdaA Kratky plot
Sample: Cyclic di-AMP synthase CdaA dimer, 44 kDa Bacillus subtilis (strain … protein
Buffer: 30 mM Tris, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Jul 21
Structural basis for the inhibition of the Bacillus subtilis c-di-AMP cyclase CdaA by the phosphoglucomutase GlmM Journal of Biological Chemistry :101317 (2021)
Pathania M, Tosi T, Millership C, Hoshiga F, Morgan R, Freemont P, Gründling A
RgGuinier 2.6 nm
Dmax 8.9 nm
VolumePorod 60 nm3

4891 hits found.