Small Angle Scattering Biological Data Bank SASBDB

SASDL93 – Ubiquitin activating enzyme 5 with ubiquitin-fold modifier 1 (UBA5 4 mg/mL + UFM1 1.0 mg/ml)

Ubiquitin-like modifier-activating enzyme 5Ubiquitin fold modifer 1 experimental SAS data

Sample:	Ubiquitin-like modifier-activating enzyme 5 dimer, 68 kDa Homo sapiens protein Ubiquitin fold modifer 1 monomer, 9 kDa Homo sapiens protein
Buffer:	20 mM Tris, 50 mM NaCl, 2 mM DTT, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 29

Structure and dynamics of UBA5-UFM1 complex formation showing new insights in the UBA5 activation mechanism Journal of Structural Biology :107796 (2021)
Fuchs S, Kikhney A, Schubert R, Kaiser C, Liebau E, Svergun D, Betzel C, Perbandt M

R_g^Guinier	3.1	nm
D_max	13.0	nm

SASDLA3 – Ubiquitin activating enzyme 5 with ubiquitin-fold modifier 1 (UBA5 5 mg/mL + UFM1 1.25 mg/ml)

Sample:	Ubiquitin-like modifier-activating enzyme 5 dimer, 68 kDa Homo sapiens protein Ubiquitin fold modifer 1 monomer, 9 kDa Homo sapiens protein
Buffer:	20 mM Tris, 50 mM NaCl, 2 mM DTT, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 29

R_g^Guinier	3.1	nm
D_max	13.0	nm
Volume^Porod	100	nm³

SASDLB3 – Ubiquitin activating enzyme 5 with ubiquitin-fold modifier 1 (UBA5 6 mg/mL + UFM1 1.5 mg/mL)

Sample:	Ubiquitin-like modifier-activating enzyme 5 dimer, 68 kDa Homo sapiens protein Ubiquitin fold modifer 1 monomer, 9 kDa Homo sapiens protein
Buffer:	20 mM Tris, 50 mM NaCl, 2 mM DTT, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 29

R_g^Guinier	3.1	nm
D_max	13.0	nm
Volume^Porod	103	nm³

SASDLC3 – Ubiquitin activating enzyme 5 with ubiquitin-fold modifier 1 (UBA5 7 mg/mL + UFM1 1.75 mg/mL)

Sample:	Ubiquitin-like modifier-activating enzyme 5 dimer, 68 kDa Homo sapiens protein Ubiquitin fold modifer 1 monomer, 9 kDa Homo sapiens protein
Buffer:	20 mM Tris, 50 mM NaCl, 2 mM DTT, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 29

R_g^Guinier	3.1	nm
D_max	13.0	nm
Volume^Porod	104	nm³

SASDLD3 – Ubiquitin activating enzyme 5 with ubiquitin-fold modifier 1 (UBA5 8 mg/mL + UFM1 2 mg/mL)

Sample:	Ubiquitin-like modifier-activating enzyme 5 dimer, 68 kDa Homo sapiens protein Ubiquitin fold modifer 1 monomer, 9 kDa Homo sapiens protein
Buffer:	20 mM Tris, 50 mM NaCl, 2 mM DTT, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 29

R_g^Guinier	3.1	nm
D_max	13.0	nm
Volume^Porod	106	nm³

SASDLE3 – Ubiquitin activating enzyme 5 with ubiquitin-fold modifier 1 (UBA5 9 mg/mL + UFM1 2.25 mg/mL)

Sample:	Ubiquitin-like modifier-activating enzyme 5 dimer, 68 kDa Homo sapiens protein Ubiquitin fold modifer 1 monomer, 9 kDa Homo sapiens protein
Buffer:	20 mM Tris, 50 mM NaCl, 2 mM DTT, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 29

R_g^Guinier	3.2	nm
D_max	14.5	nm
Volume^Porod	111	nm³

SASDLE5 – RORg2 bound to a Classic-RORgamma Response Element

Retinoid-related orphan receptor-gammaClassic-RORgamma Response Element experimental SAS data

RORg2 bound to a Classic-RORgamma Response Element Rg histogram

Sample:	Retinoid-related orphan receptor-gamma monomer, 56 kDa Homo sapiens protein Classic-RORgamma Response Element dimer, 19 kDa Homo sapiens DNA
Buffer:	25 mM HEPES, 150 mM TCEP, 2% Glycerol, 5 mM DTT, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2020 Nov 20

Conformational Changes of RORγ During Response Element Recognition and Coregulator Engagement Journal of Molecular Biology :167258 (2021)
Strutzenberg T, Zhu Y, Novick S, Garcia-Ordonez R, Doebelin C, He Y, Ra Chang M, Kamenecka T, Edwards D, Griffin P

R_g^Guinier	5.5	nm
D_max	22.9	nm
Volume^Porod	132	nm³

SASDLF5 – RORg2 bound to a Variant-RORgamma Response Element

Retinoid-related orphan receptor-gammaVariant-RORgamma Response Element experimental SAS data

RORg2 bound to a Variant-RORgamma Response Element Rg histogram

Sample:	Retinoid-related orphan receptor-gamma monomer, 56 kDa Homo sapiens protein Variant-RORgamma Response Element dimer, 18 kDa Homo sapiens DNA
Buffer:	25 mM HEPES, 150 mM TCEP, 2% Glycerol, 5 mM DTT, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2020 Nov 20

R_g^Guinier	4.4	nm
D_max	22.1	nm
Volume^Porod	112	nm³

SASDM82 – Ubiquitin-fold modifier 1

Ubiquitin fold modifer 1 experimental SAS data

Sample:	Ubiquitin fold modifer 1 monomer, 9 kDa Homo sapiens protein
Buffer:	20 mM Tris, 150 mM NaCl, 2 mM DTT, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2019 Jun 13

R_g^Guinier	1.5	nm
D_max	5.1	nm
Volume^Porod	16	nm³

SASDK28 – Lipid A phosphoethanolamine transferase in n-dodecyl-phosphocholine micelles

YhbX/YhjW/YijP/YjdB family protein (L152F) experimental SAS data

Lipid A phosphoethanolamine transferase in n-dodecyl-phosphocholine micelles Rg histogram

Sample:	YhbX/YhjW/YijP/YjdB family protein (L152F) monomer, 62 kDa Neisseria meningitidis serogroup … protein
Buffer:	50 mM HEPES, 100 mM NaCl, 0.14% Fos-Choline 12 (FC-12), pH: 7
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2015 Nov 9

Conformational flexibility of EptA driven by an interdomain helix provides insights for enzyme-substrate recognition. IUCrJ 8(Pt 5):732-746 (2021)
Anandan A, Dunstan NW, Ryan TM, Mertens HDT, Lim KYL, Evans GL, Kahler CM, Vrielink A

R_g^Guinier	4.6	nm
D_max	17.1	nm
Volume^Porod	186	nm³

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