Functional Characterization of Arabidopsis α-Amylase3 (AMY3): Amylose Specificity and Structural Insights into Its Duplex Carbohydrate-Binding Module

Christopher Berndsen Submitted to SASBDB: 2025 Sep 12
Published in SASBDB:

SASDX79 – carbohydrate binding duplex of AMY3 (alpha-amylase 3)

carbohydrate binding modules of AMY3 (alpha-amylase 3, chloroplastic) experimental SAS data
carbohydrate binding modules of AMY3 (alpha-amylase 3, chloroplastic) Kratky plot
Sample: Carbohydrate binding modules of AMY3 (alpha-amylase 3, chloroplastic) dimer, 77 kDa Arabidopsis thaliana protein
Buffer: 100 mM potassium phosphate, pH: 7.4
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2024 Jun 19
RgGuinier 3.2 nm
Dmax 9.9 nm
VolumePorod 110 nm3

SASDX99 – cross-linked carbohydrate binding duplex of AMY3 (alpha-amylase 3)

cross-linked carbohydrate binding modules of AMY3 (alpha-amylase 3, chloroplastic) experimental SAS data
BILBOMD model
Sample: Cross-linked carbohydrate binding modules of AMY3 (alpha-amylase 3, chloroplastic) dimer, 78 kDa Arabidopsis thaliana protein
Buffer: 100 mM potassium phosphate, pH: 7.4
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2024 Jun 19
RgGuinier 3.3 nm
Dmax 10.6 nm
VolumePorod 106 nm3

SASDX89 – AMY3 (alpha-amylase 3) catalytic domain

amylase domain of AMY3 (alpha-amylase 3, chloroplastic) experimental SAS data
ALPHAFOLD model
Sample: Amylase domain of AMY3 (alpha-amylase 3, chloroplastic) monomer, 47 kDa Arabidopsis thaliana protein
Buffer: 100 mM potassium phosphate, pH: 7.4
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2025 Jun 4
RgGuinier 2.4 nm
Dmax 8.2 nm
VolumePorod 57 nm3