Small Angle Scattering Biological Data Bank SASBDB

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18 hits found for Karthikeyan Dhamotharan

SASDR83 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) complexed with 5'-genomic RNA Stem loop 2 and 3 of SARS-CoV-2 in HEPES conditions

Stem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2Nucleoprotein experimental SAS data

Stem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2 Nucleoprotein Kratky plot

Sample:	Stem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2 monomer, 14 kDa Severe acute respiratory … RNA Nucleoprotein dimer, 30 kDa Severe acute respiratory … protein
Buffer:	25 mM HEPES, 75 mM KCl, 2.5 mM NaNO3, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Nov 29

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements
Karthikeyan Dhamotharan

R_g^Guinier	2.9	nm
D_max	10.5	nm
Volume^Porod	69	nm³

SASDR93 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) complexed with 5'-genomic RNA Stem loop 4 with AU extension of SARS-CoV-2 in HEPES conditions

NucleoproteinStem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 experimental SAS data

Nucleoprotein Stem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	Nucleoprotein monomer, 15 kDa Severe acute respiratory … protein Stem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 monomer, 22 kDa Severe acute respiratory … RNA
Buffer:	25 mM HEPES, 75 mM KCl, 2.5 mM NaNO3, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Nov 29

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements
Karthikeyan Dhamotharan

R_g^Guinier	3.2	nm
D_max	11.8	nm
Volume^Porod	50	nm³

SASDRA3 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) complexed with 5'-genomic RNA AU extension of SARS-CoV-2 in HEPES conditions

AU extension in the 5'-genomic end of SARS-CoV-2Nucleoprotein experimental SAS data

AU extension in the 5'-genomic end of SARS-CoV-2 Nucleoprotein Kratky plot

Sample:	AU extension in the 5'-genomic end of SARS-CoV-2 monomer, 7 kDa Severe acute respiratory … RNA Nucleoprotein dimer, 30 kDa Severe acute respiratory … protein
Buffer:	25 mM HEPES, 75 mM KCl, 2.5 mM NaNO3, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Nov 29

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements
Karthikeyan Dhamotharan

R_g^Guinier	2.6	nm
D_max	9.0	nm
Volume^Porod	46	nm³

SASDRB3 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) complexed with 5'-genomic RNA Stem loop 4 of SARS-CoV-2 in HEPES conditions

NucleoproteinStem loop 4 in the 5'-genomic end of SARS-CoV-2 experimental SAS data

Nucleoprotein Stem loop 4 in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	Nucleoprotein monomer, 15 kDa Severe acute respiratory … protein Stem loop 4 in the 5'-genomic end of SARS-CoV-2 monomer, 14 kDa Severe acute respiratory … RNA
Buffer:	25 mM HEPES, 75 mM KCl, 2.5 mM NaNO3, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Nov 29

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements
Karthikeyan Dhamotharan

R_g^Guinier	2.7	nm
D_max	10.0	nm
Volume^Porod	46	nm³

SASDPK6 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) of SARS-CoV-2 in phosphate conditions

Nucleoprotein experimental SAS data

PDB (PROTEIN DATA BANK) model

Sample:	Nucleoprotein monomer, 15 kDa Severe acute respiratory … protein
Buffer:	25 mM potassium phosphate, 150 mM KCl, 2 mM TCEP, pH: 6.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Aug 16

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	1.6	nm
D_max	6.1	nm
Volume^Porod	23	nm³

SASDPL6 – 5'-genomic RNA Stem loop 2 and 3 of SARS-CoV-2 in phosphate conditions

Stem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2 experimental SAS data

RNAMASONRY model

Sample:	Stem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2 monomer, 14 kDa Severe acute respiratory … RNA
Buffer:	25 mM potassium phosphate, 150 mM KCl, 2 mM TCEP, pH: 6.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Nov 22

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	2.2	nm
D_max	8.0	nm
Volume^Porod	24	nm³

SASDPM6 – 5'-genomic RNA Stem loop 4 of SARS-CoV-2 in phosphate conditions

Stem loop 4 in the 5'-genomic end of SARS-CoV-2 experimental SAS data

RNAMASONRY model

Sample:	Stem loop 4 in the 5'-genomic end of SARS-CoV-2 monomer, 14 kDa Severe acute respiratory … RNA
Buffer:	25 mM potassium phosphate, 150 mM KCl, 2 mM TCEP, pH: 6.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Nov 22

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	2.0	nm
D_max	7.1	nm
Volume^Porod	22	nm³

SASDPN6 – 5'-genomic RNA Stem loop 4 with AU extension of SARS-CoV-2 in phosphate conditions

Stem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 experimental SAS data

RNAMASONRY model

Sample:	Stem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 monomer, 22 kDa Severe acute respiratory … RNA
Buffer:	25 mM potassium phosphate, 150 mM KCl, 2 mM TCEP, pH: 6.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Nov 22

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	2.8	nm
D_max	10.2	nm
Volume^Porod	33	nm³

SASDPP6 – 5'-genomic RNA AU extension of SARS-CoV-2 in phosphate conditions

AU extension in the 5'-genomic end of SARS-CoV-2 experimental SAS data

RNAMASONRY model

Sample:	AU extension in the 5'-genomic end of SARS-CoV-2 monomer, 7 kDa Severe acute respiratory … RNA
Buffer:	25 mM potassium phosphate, 150 mM KCl, 2 mM TCEP, pH: 6.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Nov 22

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	1.5	nm
D_max	5.4	nm
Volume^Porod	13	nm³

SASDPQ6 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) complexed with 5'-genomic RNA Stem loop 2 and 3 of SARS-CoV-2 in phosphate conditions

NucleoproteinStem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2 experimental SAS data

Nucleoprotein Stem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	Nucleoprotein monomer, 15 kDa Severe acute respiratory … protein Stem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2 monomer, 14 kDa Severe acute respiratory … RNA
Buffer:	25 mM potassium phosphate, 150 mM KCl, 2 mM TCEP, pH: 6.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Aug 16

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	2.4	nm
D_max	9.0	nm
Volume^Porod	38	nm³

SASDPR6 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) complexed with 5'-genomic RNA Stem loop 4 with AU extension of SARS-CoV-2 in phosphate conditions

NucleoproteinStem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 experimental SAS data

Nucleoprotein Stem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	Nucleoprotein monomer, 15 kDa Severe acute respiratory … protein Stem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 monomer, 22 kDa Severe acute respiratory … RNA
Buffer:	25 mM potassium phosphate, 150 mM KCl, 2 mM TCEP, pH: 6.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Aug 16

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	3.4	nm
D_max	13.5	nm
Volume^Porod	51	nm³

SASDPS6 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) complexed with 5'-genomic RNA AU extension of SARS-CoV-2 in phosphate conditions

NucleoproteinAU extension in the 5'-genomic end of SARS-CoV-2 experimental SAS data

Nucleoprotein AU extension in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	Nucleoprotein monomer, 15 kDa Severe acute respiratory … protein AU extension in the 5'-genomic end of SARS-CoV-2 monomer, 7 kDa Severe acute respiratory … RNA
Buffer:	25 mM potassium phosphate, 150 mM KCl, 2 mM TCEP, pH: 6.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Aug 16

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	2.1	nm
D_max	8.5	nm
Volume^Porod	32	nm³

SASDPT6 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) with 5'-genomic RNA Stem loop 4 of SARS-CoV-2 in phosphate conditions (mixture)

NucleoproteinStem loop 4 in the 5'-genomic end of SARS-CoV-2 experimental SAS data

Nucleoprotein Stem loop 4 in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	Nucleoprotein monomer, 15 kDa Severe acute respiratory … protein Stem loop 4 in the 5'-genomic end of SARS-CoV-2 monomer, 14 kDa Severe acute respiratory … RNA
Buffer:	25 mM potassium phosphate, 150 mM KCl, 2 mM TCEP, pH: 6.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Nov 22

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	2.1	nm
D_max	7.8	nm
Volume^Porod	25	nm³

SASDR33 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) of SARS-CoV-2 in HEPES conditions

Nucleoprotein experimental SAS data

PDB (PROTEIN DATA BANK) model

Sample:	Nucleoprotein monomer, 15 kDa Severe acute respiratory … protein
Buffer:	25 mM HEPES, 75 mM KCl, 2.5 mM NaNO3, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Nov 29

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	1.6	nm
D_max	5.2	nm
Volume^Porod	26	nm³

SASDR43 – 5'-genomic RNA Stem loop 2 and 3 of SARS-CoV-2 in HEPES conditions

Stem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2 experimental SAS data

Stem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	Stem loop 2 and 3 in the 5'-genomic end of SARS-CoV-2 monomer, 14 kDa Severe acute respiratory … RNA
Buffer:	25 mM HEPES, 75 mM KCl, 2.5 mM NaNO3, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Nov 29

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	2.3	nm
D_max	9.5	nm
Volume^Porod	28	nm³

SASDR53 – 5'-genomic RNA Stem loop 4 of SARS-CoV-2 in HEPES conditions

Stem loop 4 in the 5'-genomic end of SARS-CoV-2 experimental SAS data

Stem loop 4 in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	Stem loop 4 in the 5'-genomic end of SARS-CoV-2 monomer, 14 kDa Severe acute respiratory … RNA
Buffer:	25 mM HEPES, 75 mM KCl, 2.5 mM NaNO3, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Nov 29

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	2.1	nm
D_max	7.7	nm
Volume^Porod	22	nm³

SASDR63 – 5'-genomic RNA Stem loop 4 with AU extension of SARS-CoV-2 in HEPES conditions

Stem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 experimental SAS data

Stem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	Stem loop 4 with AU extension in the 5'-genomic end of SARS-CoV-2 monomer, 22 kDa Severe acute respiratory … RNA
Buffer:	25 mM HEPES, 75 mM KCl, 2.5 mM NaNO3, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Nov 29

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	3.1	nm
D_max	11.7	nm
Volume^Porod	35	nm³

SASDR73 – 5'-genomic RNA AU extension of SARS-CoV-2 in HEPES conditions

AU extension in the 5'-genomic end of SARS-CoV-2 experimental SAS data

AU extension in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	AU extension in the 5'-genomic end of SARS-CoV-2 monomer, 7 kDa Severe acute respiratory … RNA
Buffer:	25 mM HEPES, 75 mM KCl, 2.5 mM NaNO3, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Nov 29

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements. Nat Commun 14(1):3331 (2023)
...Dhamotharan K, Jeffries CM, Schlundt A

R_g^Guinier	1.7	nm
D_max	7.0	nm
Volume^Porod	13	nm³