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5 hits found for Snoj

SASDUN2 – DiTET-cc (coiled coil protein origami tetrahedron assembled from two cyclized chains)

cyRH1 (cyclic bitrigon from 6 coiled coil segments)cyRH2 (cyclic bitrigon from 6 coiled coil segments) experimental SAS data
SREFLEX model
Sample: cyRH1 (cyclic bitrigon from 6 coiled coil segments) monomer, 26 kDa synthetic construct protein
cyRH2 (cyclic bitrigon from 6 coiled coil segments) monomer, 26 kDa synthetic construct protein
Buffer: 20 mM Tris, 150 mM NaCL, 3% glycerol, 1mM TCEP, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Mar 30
Preorganized cyclic modules facilitate the self-assembly of protein nanostructures Chemical Science (2024)
Snoj J, Lapenta F, Jerala R
RgGuinier 3.1 nm
Dmax 8.8 nm
VolumePorod 150 nm3

SASDUP2 – DiTET-nc (coiled coil protein origami tetrahedron assembled from one linear and one cyclized chain)

RH1 (Linear coiled-coil protein origami structure consisting of 6 coiled-coil forming segments)cyRH2 (cyclic bitrigon from 6 coiled coil segments) experimental SAS data
SREFLEX model
Sample: RH1 (Linear coiled-coil protein origami structure consisting of 6 coiled-coil forming segments) monomer, 26 kDa synthetic construct protein
cyRH2 (cyclic bitrigon from 6 coiled coil segments) monomer, 26 kDa synthetic construct protein
Buffer: 50 mM Tris, 150 mM NaCL, 3% glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2022 Aug 29
Preorganized cyclic modules facilitate the self-assembly of protein nanostructures Chemical Science (2024)
Snoj J, Lapenta F, Jerala R
RgGuinier 3.6 nm
Dmax 12.5 nm
VolumePorod 161 nm3

SASDUQ2 – DiTET-nn (coiled coil protein origami assembled from two linear chains)

RH1 (Linear coiled-coil protein origami structure consisting of 6 coiled-coil forming segments)RH2 (Linear coiled-coil protein origami structure consisting of 6 coiled-coil forming segments) experimental SAS data
SREFLEX model
Sample: RH1 (Linear coiled-coil protein origami structure consisting of 6 coiled-coil forming segments) monomer, 26 kDa synthetic construct protein
RH2 (Linear coiled-coil protein origami structure consisting of 6 coiled-coil forming segments) monomer, 26 kDa synthetic construct protein
Buffer: 20 mM Tris, 150 mM NaCL, 3% glycerol, 1mM TCEP, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Aug 9
Preorganized cyclic modules facilitate the self-assembly of protein nanostructures Chemical Science (2024)
Snoj J, Lapenta F, Jerala R
RgGuinier 4.3 nm
Dmax 14.7 nm
VolumePorod 161 nm3

SASDUR2 – SB24-nnn (coiled coil protein origami irregular octahedron assembled from three linear chains)

SB6 (Linear coiled-coil protein origami structure consisting of 6 coiled-coil forming segments)SB9b (Linear coiled-coil protein origami structure consisting of 9 coiled-coil forming segments)SB9c (Linear coiled-coil protein origami structure consisting of 9 coiled-coil forming segments) experimental SAS data
MODELLER model
Sample: SB6 (Linear coiled-coil protein origami structure consisting of 6 coiled-coil forming segments) monomer, 26 kDa synthetic construct protein
SB9b (Linear coiled-coil protein origami structure consisting of 9 coiled-coil forming segments) monomer, 42 kDa synthetic construct protein
SB9c (Linear coiled-coil protein origami structure consisting of 9 coiled-coil forming segments) monomer, 41 kDa synthetic construct protein
Buffer: 20 mM Tris, 150 mM NaCL, 3% glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Oct 25
Preorganized cyclic modules facilitate the self-assembly of protein nanostructures Chemical Science (2024)
Snoj J, Lapenta F, Jerala R
RgGuinier 4.8 nm
Dmax 16.1 nm
VolumePorod 443 nm3

SASDUS2 – SB24-ncn (coiled coil protein origami irregular octahedron assembled from 2 linear chains and 1 cyclic chain)

SB9b (Linear coiled-coil protein origami structure consisting of 9 coiled-coil forming segments)SB9c (Linear coiled-coil protein origami structure consisting of 9 coiled-coil forming segments)cySB6 (Cyclic coiled-coil protein origami structure consisting of 6 coiled-coil forming segments) experimental SAS data
COOT model
Sample: SB9b (Linear coiled-coil protein origami structure consisting of 9 coiled-coil forming segments) monomer, 42 kDa synthetic construct protein
SB9c (Linear coiled-coil protein origami structure consisting of 9 coiled-coil forming segments) monomer, 41 kDa synthetic construct protein
cySB6 (Cyclic coiled-coil protein origami structure consisting of 6 coiled-coil forming segments) monomer, 26 kDa synthetic construct protein
Buffer: 20 mM Tris, 150 mM NaCL, 3% glycerol, 1mM TCEP, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Aug 9
Preorganized cyclic modules facilitate the self-assembly of protein nanostructures Chemical Science (2024)
Snoj J, Lapenta F, Jerala R
RgGuinier 4.7 nm
Dmax 14.7 nm
VolumePorod 428 nm3