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5 hits found for inverted repeat DNA

SASDXR2 – RAR/RXR heterodimer : BMS493 : IR0 element

Retinoic acid receptor alphaBMS493 (RAR inverse agonist ligand)Retinoid X receptor alphaInverted Repeat binding site with zero-base-pair spacing experimental SAS data
Retinoic acid receptor alpha BMS493 (RAR inverse agonist ligand) Retinoid X receptor alpha Inverted Repeat binding site with zero-base-pair spacing Kratky plot
Sample: Retinoic acid receptor alpha monomer, 39 kDa Mus musculus protein
BMS493 (RAR inverse agonist ligand) monomer, 0 kDa
Retinoid X receptor alpha monomer, 38 kDa Homo sapiens protein
Inverted Repeat binding site with zero-base-pair spacing monomer, 11 kDa DNA
Buffer: 20 mM Tris HCl, 75 mM NaCl, 75 mM KCl, 2 mM CHAPS, 4 mM MgCl₂, 12 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2022 Apr 20
...DNA, ligands, and transcriptional coregulators. Nucleic Acids Res 53(18) (2025)
Tambones I, Sagar A, Vankova P, Loginov D, Carivenc C, Rochel N, Bourguet W, Man P, Bernadó P, le Maire A
RgGuinier 3.9 nm
Dmax 12.9 nm
VolumePorod 121 nm3

SASDXV2 – RAR/RXR heterodimer : BMS493 : NCoR NID : IR0 element

Retinoic acid receptor alphaBMS493 (RAR inverse agonist ligand)Retinoid X receptor alphaInverted Repeat binding site with zero-base-pair spacingNuclear receptor corepressor 1 experimental SAS data
Retinoic acid receptor alpha BMS493 (RAR inverse agonist ligand) Retinoid X receptor alpha Inverted Repeat binding site with zero-base-pair spacing Nuclear receptor corepressor 1 Kratky plot
Sample: Retinoic acid receptor alpha monomer, 39 kDa Mus musculus protein
BMS493 (RAR inverse agonist ligand) monomer, 0 kDa
Retinoid X receptor alpha monomer, 38 kDa Homo sapiens protein
Inverted Repeat binding site with zero-base-pair spacing monomer, 11 kDa DNA
Nuclear receptor corepressor 1 monomer, 29 kDa Mus musculus protein
Buffer: 20 mM Tris HCl, 75 mM NaCl, 75 mM KCl, 2 mM CHAPS, 4 mM MgCl₂, 12 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2022 Apr 20
...DNA, ligands, and transcriptional coregulators. Nucleic Acids Res 53(18) (2025)
Tambones I, Sagar A, Vankova P, Loginov D, Carivenc C, Rochel N, Bourguet W, Man P, Bernadó P, le Maire A
RgGuinier 5.5 nm
Dmax 22.9 nm
VolumePorod 257 nm3

SASDXV3 – ...inverted repeat DNA

inverted repeat DNAIsoform 3 of Bile acid receptor experimental SAS data
ALPHAFOLD model
Sample: inverted repeat DNA monomer, 11 kDa DNA
Isoform 3 of Bile acid receptor dimer, 83 kDa Homo sapiens protein
Buffer: 50 mM HEPES, 150 mM NaCl, 5 % glycerol, 1 mM DTT, 20 µM CDCA, pH: 7.4
Experiment: SAXS data collected at Rigaku BioSAXS-2000, Pennsylvania State University on 2024 May 9
DNA induces non-canonical dimerization of the farnesoid X receptor. Nucleic Acids Res 54(4) (2026)
Khan SH, Yennawar N, Okafor CD
RgGuinier 5.1 nm
Dmax 23.2 nm
VolumePorod 120 nm3

SASDVU5 – ...DNA

Auxin response factorHigh Affinity ARF binding sequence inverted repeat with 6 nucleotide spacing experimental SAS data
SWISSMODEL model
Sample: Auxin response factor monomer, 46 kDa Marchantia polymorpha protein
...inverted repeat with 6 nucleotide spacing dimer, 12 kDa DNA
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 1 mM DTT, pH: 8
Experiment: SAXS data collected at BL11 - NCD, ALBA on 2019 Dec 3
...DNA binding domain of class B MpARF2 share more traits with class A AtARF5 than to that of class B AtARF1. Structure (2025)
Crespo I, Malfois M, Rienstra J, Tarrés-Solé A, van den Berg W, Weijers D, Boer DR
RgGuinier 3.1 nm
Dmax 8.4 nm
VolumePorod 67 nm3

SASDVV5 – ...DNA

Auxin response factor 1High Affinity ARF binding sequence inverted repeat with 7 nucleotide spacing experimental SAS data
Auxin response factor 1 High Affinity ARF binding sequence inverted repeat with 7 nucleotide spacing Kratky plot
Sample: Auxin response factor 1 dimer, 81 kDa Arabidopsis thaliana protein
...inverted repeat with 7 nucleotide spacing dimer, 13 kDa DNA
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 1 mM DTT, pH: 8
Experiment: SAXS data collected at BL11 - NCD, ALBA on 2019 Dec 3
...DNA binding domain of class B MpARF2 share more traits with class A AtARF5 than to that of class B AtARF1. Structure (2025)
Crespo I, Malfois M, Rienstra J, Tarrés-Solé A, van den Berg W, Weijers D, Boer DR
RgGuinier 3.6 nm
Dmax 10.5 nm
VolumePorod 136 nm3