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14 hits found for Berndsen

SASDUZ9 – BAM2 in 100 mM KCl (0.5 mg/mL)

Beta-amylase 2, chloroplastic experimental SAS data
Beta-amylase 2, chloroplastic Kratky plot
Sample: Beta-amylase 2, chloroplastic tetramer, 229 kDa Arabidopsis thaliana protein
Buffer: 50 mM HEPES, 100 mM KCl, pH: 7
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Sep 17
Potassium cations expand the conformation ensemble of Arabidopsis thaliana β-amylase2 (BAM2). MicroPubl Biol 2024 (2024)
...Berndsen CE
RgGuinier 4.9 nm
Dmax 15.0 nm
VolumePorod 234 nm3

SASDV22 – BAM2 in 100 mM KCl (1 mg/mL)

Beta-amylase 2, chloroplastic experimental SAS data
Beta-amylase 2, chloroplastic Kratky plot
Sample: Beta-amylase 2, chloroplastic tetramer, 229 kDa Arabidopsis thaliana protein
Buffer: 50 mM HEPES, 100 mM KCl, pH: 7
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Sep 17
Potassium cations expand the conformation ensemble of Arabidopsis thaliana β-amylase2 (BAM2). MicroPubl Biol 2024 (2024)
...Berndsen CE
RgGuinier 4.7 nm
Dmax 15.1 nm
VolumePorod 218 nm3

SASDV32 – BAM2 in 100 mM KCl (2 mg/mL)

Beta-amylase 2, chloroplastic experimental SAS data
Beta-amylase 2, chloroplastic Kratky plot
Sample: Beta-amylase 2, chloroplastic tetramer, 229 kDa Arabidopsis thaliana protein
Buffer: 50 mM HEPES, 100 mM KCl, pH: 7
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Sep 17
Potassium cations expand the conformation ensemble of Arabidopsis thaliana β-amylase2 (BAM2). MicroPubl Biol 2024 (2024)
...Berndsen CE
RgGuinier 4.7 nm
Dmax 15.0 nm
VolumePorod 220 nm3

SASDGY4 – Beta-amylase 2, chloroplastic (AtBAM2)

Beta-amylase 2, chloroplastic experimental SAS data
YASARA model
Sample: Beta-amylase 2, chloroplastic tetramer, 229 kDa Arabidopsis thaliana protein
Buffer: 50 mM HEPES, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Jun 11
Solution structure and assembly of β-amylase2 from Arabidopsis thaliana (2019)
...Berndsen C
RgGuinier 4.2 nm
Dmax 12.6 nm
VolumePorod 308 nm3

SASDGZ4 – Beta-amylase 2, chloroplastic (AtBAM2) Ndel1

Beta-amylase 2, chloroplastic experimental SAS data
Beta-amylase 2, chloroplastic Kratky plot
Sample: Beta-amylase 2, chloroplastic tetramer, 215 kDa Arabidopsis thaliana protein
Buffer: 50 mM HEPES, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Jun 11
Solution structure and assembly of β-amylase2 from Arabidopsis thaliana (2019)
...Berndsen C
RgGuinier 4.4 nm
Dmax 11.0 nm
VolumePorod 272 nm3

SASDMA5 – cone-rod homeobox protein (a peptide of the DNA binding domain of CRX)

Cone-rod homeobox protein experimental SAS data
OTHER model
Sample: Cone-rod homeobox protein monomer, 7 kDa Homo sapiens protein
Buffer: 50 mM sodium phosphate,100 mM NaCl, and 5 mM imidazole, pH: 7
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2021 Jun 15
Structural and functional analysis of the human Cone-rod homeobox transcription factor. Proteins (2022)
...Berndsen CE
RgGuinier 1.2 nm
Dmax 4.0 nm
VolumePorod 10 nm3

SASDVW5 – alpha-amylase AMY3

Alpha-amylase 3, chloroplastic experimental SAS data
BILBOMD model
Sample: Alpha-amylase 3, chloroplastic dimer, 187 kDa Arabidopsis thaliana protein
Buffer: 20 mM HEPES, 100 mM NaCl, 0.2 mM TCEP, pH: 7
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 May 16
The Pseudoenzyme β‐Amylase9 From Arabidopsis Activates α‐Amylase3: A Possible Mechanism to Promote Stress‐Induced Starch Degradation Proteins: Structure, Function, and Bioinformatics (2025)
Berndsen C, Storm A, Sardelli A, Hossain S, Clermont K, McFather L, Connor M, Monroe J
RgGuinier 5.1 nm
Dmax 21.5 nm
VolumePorod 444 nm3

SASDMX5 – Zea mays beta-amylase (ZmBAM7) short

Beta-amylase experimental SAS data
Beta-amylase Kratky plot
Sample: Beta-amylase tetramer, 231 kDa Zea mays protein
Buffer: 50 mM HEPES, 25 mM NaCl, and 0.2 mM TCEP, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2020 Dec 7
The BAM7 gene in Zea mays encodes a protein with similar structural and catalytic properties to Arabidopsis BAM2 Acta Crystallographica Section D Structural Biology 78(5) (2022)
...Berndsen C
RgGuinier 5.3 nm
Dmax 16.3 nm
VolumePorod 615 nm3

SASDVX5 – pseudoamylase BAM9

Inactive beta-amylase 9 experimental SAS data
ALPHAFOLD model
Sample: Inactive beta-amylase 9 monomer, 50 kDa Arabidopsis thaliana protein
Buffer: 20 mM HEPES, 100 mM NaCl, 0.2 mM TCEP, pH: 7
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 May 16
The Pseudoenzyme β‐Amylase9 From Arabidopsis Activates α‐Amylase3: A Possible Mechanism to Promote Stress‐Induced Starch Degradation Proteins: Structure, Function, and Bioinformatics (2025)
Berndsen C, Storm A, Sardelli A, Hossain S, Clermont K, McFather L, Connor M, Monroe J
RgGuinier 2.4 nm
Dmax 8.7 nm
VolumePorod 87 nm3

SASDMY5 – Truncated Zea mays beta-amylase (ZmBAM7) short

Beta-amylase experimental SAS data
Beta-amylase Kratky plot
Sample: Beta-amylase tetramer, 231 kDa Zea mays protein
Buffer: 50 mM HEPES, 25 mM NaCl, and 0.2 mM TCEP, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2020 Dec 7
The BAM7 gene in Zea mays encodes a protein with similar structural and catalytic properties to Arabidopsis BAM2 Acta Crystallographica Section D Structural Biology 78(5) (2022)
...Berndsen C
RgGuinier 5.1 nm
Dmax 13.9 nm
VolumePorod 467 nm3

SASDVY5 – pseudoamylase BAM9 bound to alpha-amylase AMY3

Inactive beta-amylase 9Alpha-amylase 3, chloroplastic experimental SAS data
BILBOMD model
Sample: Inactive beta-amylase 9 monomer, 50 kDa Arabidopsis thaliana protein
Alpha-amylase 3, chloroplastic monomer, 94 kDa Arabidopsis thaliana protein
Buffer: 20 mM HEPES, 100 mM NaCl, 0.2 mM TCEP, pH: 7
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 May 16
The Pseudoenzyme β‐Amylase9 From Arabidopsis Activates α‐Amylase3: A Possible Mechanism to Promote Stress‐Induced Starch Degradation Proteins: Structure, Function, and Bioinformatics (2025)
Berndsen C, Storm A, Sardelli A, Hossain S, Clermont K, McFather L, Connor M, Monroe J
RgGuinier 5.0 nm
Dmax 25.5 nm
VolumePorod 380 nm3

SASDMZ5 – Arabidopsis thaliana beta-amylase 1

Beta-amylase 1, chloroplastic experimental SAS data
YASARA model
Sample: Beta-amylase 1, chloroplastic monomer, 65 kDa Arabidopsis thaliana protein
Buffer: 50 mM MES, 100 mM NaCl, 1 mM DTT, pH: 6.7
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2020 Jul 22
The BAM7 gene in Zea mays encodes a protein with similar structural and catalytic properties to Arabidopsis BAM2 Acta Crystallographica Section D Structural Biology 78(5) (2022)
...Berndsen C
RgGuinier 2.6 nm
Dmax 9.8 nm
VolumePorod 88 nm3

SASDM26 – Sweet potato beta-amylase 5

Beta-amylase experimental SAS data
Beta-amylase Kratky plot
Sample: Beta-amylase tetramer, 224 kDa Ipomoea batatas protein
Buffer: 20 mM HEPES, 150 mM NaCl, and 0.2 mM TCEP, pH: 7.3
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2020 Dec 7
The BAM7 gene in Zea mays encodes a protein with similar structural and catalytic properties to Arabidopsis BAM2 Acta Crystallographica Section D Structural Biology 78(5) (2022)
...Berndsen C
RgGuinier 4.4 nm
Dmax 14.1 nm
VolumePorod 296 nm3

SASDUY9 – BAM2 in 100 mM KCl (0.25 mg/mL)

Beta-amylase 2, chloroplastic experimental SAS data
Beta-amylase 2, chloroplastic Kratky plot
Sample: Beta-amylase 2, chloroplastic tetramer, 229 kDa Arabidopsis thaliana protein
Buffer: 50 mM HEPES, 100 mM KCl, pH: 7
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Sep 17
Potassium cations expand the conformation ensemble of Arabidopsis thaliana β-amylase2 (BAM2). MicroPubl Biol 2024 (2024)
...Berndsen CE
RgGuinier 4.9 nm
Dmax 16.4 nm
VolumePorod 226 nm3