SASBDB entries for UniProt ID:

SASDLL7 – Bartonella effector protein (Bep1), 20 °C

UniProt ID: E6YFW2 (2-558) Bartonella effector protein (Bep) substrate of VirB T4SS
Bartonella effector protein (Bep) substrate of VirB T4SS experimental SAS data
GASBOR model
Sample: Bartonella effector protein (Bep) substrate of VirB T4SS monomer, 64 kDa Bartonella clarridgeiae (strain … protein
Buffer: 25 mM Hepes, 300 mM NaCl, 1 mM TCEP, 5% v/v glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Jun 26
Structure and function of Bartonella effector protein 1: target and interdomain interactions University of Basel PhD thesis 15051 (2023)
Markus Huber, Jens Reiners
RgGuinier 3.8 nm
Dmax 13.4 nm
VolumePorod 87 nm3

SASDLM7 – Bartonella effector protein (Bep1), 35 °C

UniProt ID: E6YFW2 (2-558) Bartonella effector protein (Bep) substrate of VirB T4SS
Bartonella effector protein (Bep) substrate of VirB T4SS experimental SAS data
GASBOR model
Sample: Bartonella effector protein (Bep) substrate of VirB T4SS monomer, 64 kDa Bartonella clarridgeiae (strain … protein
Buffer: 25 mM Hepes, 300 mM NaCl, 1 mM TCEP, 5% v/v glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Jun 26
Structure and function of Bartonella effector protein 1: target and interdomain interactions University of Basel PhD thesis 15051 (2023)
Markus Huber, Jens Reiners
RgGuinier 4.1 nm
Dmax 14.4 nm
VolumePorod 108 nm3

SASDLN7 – 1:1 complex of Ferredoxin-dependent glutamate synthase 2 (FdGlts) with ferredoxin

UniProt ID: P55038 (1-1556) Ferredoxin-dependent glutamate synthase 2

UniProt ID: P0A3C8 (1-99) Ferredoxin-1
Ferredoxin-dependent glutamate synthase 2Ferredoxin-1 experimental SAS data
OTHER model
Sample: Ferredoxin-dependent glutamate synthase 2 monomer, 169 kDa Synechocystis sp. (strain … protein
Ferredoxin-1 monomer, 11 kDa Nostoc sp. (strain … protein
Buffer: Hepes– KOH buffer, pH: 7.5
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2002 Jun 4
The Active Conformation of Glutamate Synthase and its Binding to Ferredoxin Journal of Molecular Biology 330(1):113-128 (2003)
van den Heuvel R, Svergun D, Petoukhov M, Coda A, Curti B, Ravasio S, Vanoni M, Mattevi A
RgGuinier 3.6 nm
Dmax 12.3 nm
VolumePorod 262 nm3

SASDLP7 – Two-chain hepatocyte growth factor/scatter factor in complex with receptor tyrosine kinase MET

UniProt ID: Q08048 (39-728) Hepatocyte growth factor

UniProt ID: P16056 (25-927) Hepatocyte growth factor receptor
Hepatocyte growth factorHepatocyte growth factor receptor experimental SAS data
SASREF model
Sample: Hepatocyte growth factor monomer, 79 kDa Mus musculus protein
Hepatocyte growth factor receptor monomer, 100 kDa Mus musculus protein
Buffer: 50 mM MES, 150 mM NaCl, pH: 6.7
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2004 Feb 9
Structural basis of hepatocyte growth factor/scatter factor and MET signalling Proceedings of the National Academy of Sciences 103(11):4046-4051 (2006)
Gherardi E, Sandin S, Petoukhov M, Finch J, Youles M, Ofverstedt L, Miguel R, Blundell T, Vande Woude G, Skoglund U, Svergun D
RgGuinier 6.7 nm
Dmax 20.0 nm
VolumePorod 370 nm3

SASDLQ7 – receptor tyrosine kinase MET

UniProt ID: P16056 (25-927) Hepatocyte growth factor receptor
Hepatocyte growth factor receptor experimental SAS data
SASREF model
Sample: Hepatocyte growth factor receptor monomer, 100 kDa Mus musculus protein
Buffer: 50 mM MES, 150 mM NaCl, pH: 6.7
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2004 Feb 7
Structural basis of hepatocyte growth factor/scatter factor and MET signalling Proceedings of the National Academy of Sciences 103(11):4046-4051 (2006)
Gherardi E, Sandin S, Petoukhov M, Finch J, Youles M, Ofverstedt L, Miguel R, Blundell T, Vande Woude G, Skoglund U, Svergun D
RgGuinier 4.8 nm
Dmax 16.0 nm
VolumePorod 190 nm3

SASDLR7 – The HC Fragment of Tetanus Toxin

UniProt ID: P04958 (865-1315) Hc fragment of Tetanus toxin
Hc fragment of Tetanus toxin experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Hc fragment of Tetanus toxin dimer, 103 kDa Clostridium tetani (strain … protein
Buffer: 50 mM sodium phosphate buffer, 300 mM NaCl, pH: 7.8
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2004 May 14
The HC fragment of tetanus toxin forms stable, concentration-dependent dimers via an intermolecular disulphide bond. J Mol Biol 365(1):123-34 (2007)
Qazi O, Bolgiano B, Crane D, Svergun DI, Konarev PV, Yao ZP, Robinson CV, Brown KA, Fairweather N
RgGuinier 4.0 nm
Dmax 13.2 nm
VolumePorod 150 nm3

SASDLS7 – Mycobacterium phage TipsytheTRex immunity repressor bound to DNA

UniProt ID: A0A2D1GKF7 (1-183) Immunity repressor

UniProt ID: None (None-None) 21mer dsDNA
Immunity repressor21mer dsDNA experimental SAS data
BILBOMD model
Sample: Immunity repressor monomer, 21 kDa Mycobacterium phage TipsytheTRex protein
21mer dsDNA monomer, 13 kDa DNA
Buffer: 20 mM Tris pH 7.5, 0.5 M NaCl, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2018 Sep 10
A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence. Nat Commun 13(1):4105 (2022)
McGinnis RJ, Brambley CA, Stamey B, Green WC, Gragg KN, Cafferty ER, Terwilliger TC, Hammel M, Hollis TJ, Miller JM, Gainey MD, Wallen JR
RgGuinier 2.3 nm
Dmax 7.4 nm
VolumePorod 41 nm3

SASDLT7 – The Fe–S cluster assembly 1 homolog of pigeon (29.3 mg/ml), Total X-ray exposure time : 1min

UniProt ID: P0DN75 (1-132) Iron-sulfur cluster assembly 1 homolog, mitochondrial
Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Radiation resistivity of clISCA1
Shigeki Arai
RgGuinier 4.3 nm
Dmax 15.8 nm

SASDLU7 – The Fe–S cluster assembly 1 homolog of pigeon (29.3 mg/ml), Total X-ray exposure time : 2min

UniProt ID: P0DN75 (2-132) Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial
Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Radiation resistivity of clISCA1
Shigeki Arai
RgGuinier 4.4 nm

SASDLV7 – The Fe–S cluster assembly 1 homolog of pigeon (29.3 mg/ml), Total X-ray exposure time : 3min

UniProt ID: P0DN75 (2-132) Iron-sulfur cluster assembly 1 homolog, mitochondrial
Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Radiation resistivity of clISCA1
Shigeki Arai
RgGuinier 4.6 nm