SASBDB entries for UniProt ID:

SASDLA7 – Outer membrane protein complex MtrCAB

UniProt ID: Q8EG35 (35-333) Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA

UniProt ID: Q8CVD4 (22-697) Extracellular iron oxide respiratory system outer membrane component MtrB

UniProt ID: Q8EG34 (22-671) Extracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC
Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrAExtracellular iron oxide respiratory system outer membrane component MtrBExtracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC experimental SAS data
DAMMIN model
Sample: Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA monomer, 39 kDa Shewanella oneidensis (strain … protein
Extracellular iron oxide respiratory system outer membrane component MtrB monomer, 75 kDa Shewanella oneidensis (strain … protein
Extracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC monomer, 75 kDa Shewanella oneidensis (strain … protein
Buffer: 20 mM HEPES, 100 mM NaCl, 2.8 mM Fos-choline 12, 13% D2O, pH: 7.8
Experiment: SANS data collected at D22, Institut Laue-Langevin (ILL) on 2016 Sep 12
Bespoke Biomolecular Wires for Transmembrane Electron Transfer: Spontaneous Assembly of a Functionalized Multiheme Electron Conduit Frontiers in Microbiology 12 (2021)
Piper S, Edwards M, van Wonderen J, Casadevall C, Martel A, Jeuken L, Reisner E, Clarke T, Butt J
RgGuinier 5.2 nm
Dmax 17.1 nm
VolumePorod 234 nm3

SASDLB7 – Procollagen C-proteinase enhancer

UniProt ID: Q15113 (26-449) Procollagen C-endopeptidase enhancer 1
Procollagen C-endopeptidase enhancer 1 experimental SAS data
GASBOR model
Sample: Procollagen C-endopeptidase enhancer 1 monomer, 46 kDa Homo sapiens protein
Buffer: 20 mM Hepes, 500 mM NaCl, pH: 7.4
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2002 Jul 9
Low Resolution Structure Determination Shows Procollagen C-Proteinase Enhancer to be an Elongated Multidomain Glycoprotein Journal of Biological Chemistry 278(9):7199-7205 (2003)
Bernocco S, Steiglitz B, Svergun D, Petoukhov M, Ruggiero F, Ricard-Blum S, Ebel C, Geourjon C, Deléage G, Font B, Eichenberger D, Greenspan D, Hulmes D
RgGuinier 4.1 nm
Dmax 15.0 nm
VolumePorod 117 nm3

SASDLC7 – Polyribonucleotide nucleotidyltransferase (PNPase): apo form

UniProt ID: A8FMV9 (1-718) Polyribonucleotide nucleotidyltransferase
Polyribonucleotide nucleotidyltransferase experimental SAS data
DAMFILT model
Sample: Polyribonucleotide nucleotidyltransferase trimer, 246 kDa Campylobacter jejuni subsp. … protein
Buffer: 20 mM Tris-HCl, 10 mM NAH2PO4, 60 mM KCl, 1 mM MgCl2, 2 mM DTT, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2020 Mar 17
Structure and function of Campylobacter jejuni polynucleotide phosphorylase (PNPase): Insights into the role of this RNase in pathogenicity. Biochimie (2023)
Bárria C, Athayde D, Hernandez G, Fonseca L, Casinhas J, Cordeiro TN, Archer M, Arraiano CM, Brito JA, Matos RG
RgGuinier 3.9 nm
Dmax 11.0 nm
VolumePorod 310 nm3

SASDLD7 – Polyribonucleotide nucleotidyltransferase (PNPase): 2-AMP complex

UniProt ID: A8FMV9 (1-718) Polyribonucleotide nucleotidyltransferase
Polyribonucleotide nucleotidyltransferase experimental SAS data
DAMFILT model
Sample: Polyribonucleotide nucleotidyltransferase trimer, 237 kDa Campylobacter jejuni subsp. … protein
Buffer: 20 mM Tris.HCl, 10 mM NAH2PO4, 60 mM KCl, 1 mM MgCl2, 2 mM DTT, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2020 Mar 17
Structure and function of Campylobacter jejuni polynucleotide phosphorylase (PNPase): Insights into the role of this RNase in pathogenicity. Biochimie (2023)
Bárria C, Athayde D, Hernandez G, Fonseca L, Casinhas J, Cordeiro TN, Archer M, Arraiano CM, Brito JA, Matos RG
RgGuinier 3.9 nm
Dmax 11.0 nm
VolumePorod 315 nm3

SASDLE7 – Polyribonucleotide nucleotidyltransferase (PNPase): 2-GMP complex

UniProt ID: A8FMV9 (1-718) Polyribonucleotide nucleotidyltransferase
Polyribonucleotide nucleotidyltransferase experimental SAS data
DAMFILT model
Sample: Polyribonucleotide nucleotidyltransferase trimer, 237 kDa Campylobacter jejuni subsp. … protein
Buffer: 20 mM Tris.HCl, 10 mM NAH2PO4, 60 mM KCl, 1mM MgCl2, 2 mM DTT, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2020 Mar 17
Structure and function of Campylobacter jejuni polynucleotide phosphorylase (PNPase): Insights into the role of this RNase in pathogenicity. Biochimie (2023)
Bárria C, Athayde D, Hernandez G, Fonseca L, Casinhas J, Cordeiro TN, Archer M, Arraiano CM, Brito JA, Matos RG
RgGuinier 3.9 nm
Dmax 11.0 nm
VolumePorod 312 nm3

SASDLF7 – The Fe–S cluster assembly 1 homolog of pigeon (clISCA1) without the magnetic circuit

UniProt ID: P0DN75 (2-132) Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial
Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Pigeon iron-sulfur cluster assembly 1 homolog (clISCA1) 29.3 mg/ml
Shigeki Arai
RgGuinier 4.5 nm
Dmax 15.8 nm
VolumePorod 130 nm3

SASDLG7 – LDLa linker region of human Relaxin receptor 1 (RXFP1, 23-94)

UniProt ID: Q9HBX9 (23-94) Relaxin receptor 1
Relaxin receptor 1 experimental SAS data
LDLa linker region of human Relaxin receptor 1 (RXFP1, 23-94) Rg histogram
Sample: Relaxin receptor 1 monomer, 8 kDa Homo sapiens protein
Buffer: 20 mM Tris, 150 mM NaCl, 10 mM CaCl2, 0.1%NaN3, pH: 7.4
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2018 Apr 6
Structural Insights into the Unique Modes of Relaxin-Binding and Tethered-Agonist Mediated Activation of RXFP1 and RXFP2. J Mol Biol 433(21):167217 (2021)
Sethi A, Bruell S, Ryan T, Yan F, Tanipour MH, Mok YF, Draper-Joyce C, Khandokar Y, Metcalfe RD, Griffin MDW, Scott DJ, Hossain MA, Petrie EJ, Bathgate RAD, Gooley PR
RgGuinier 2.1 nm
Dmax 10.0 nm
VolumePorod 19 nm3

SASDLH7 – LDLa linker region of human Relaxin receptor 2 (RXFP2, 38-105)

UniProt ID: Q8WXD0 (38-105) Relaxin receptor 2
Relaxin receptor 2 experimental SAS data
LDLa linker region of human Relaxin receptor 2 (RXFP2, 38-105) Rg histogram
Sample: Relaxin receptor 2 monomer, 7 kDa Homo sapiens protein
Buffer: 20 mM Tris, 150 mM NaCl, 10 mM CaCl2, 0.1%NaN3, pH: 7.4
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2018 Apr 6
Structural Insights into the Unique Modes of Relaxin-Binding and Tethered-Agonist Mediated Activation of RXFP1 and RXFP2. J Mol Biol 433(21):167217 (2021)
Sethi A, Bruell S, Ryan T, Yan F, Tanipour MH, Mok YF, Draper-Joyce C, Khandokar Y, Metcalfe RD, Griffin MDW, Scott DJ, Hossain MA, Petrie EJ, Bathgate RAD, Gooley PR
RgGuinier 1.7 nm
Dmax 7.1 nm
VolumePorod 12 nm3

SASDLJ7 – Human potassium voltage-gated (Kv2.1) channel T1 domain at pH8.0

UniProt ID: Q14721 (29-147) Potassium voltage-gated channel subfamily B member 1
Potassium voltage-gated channel subfamily B member 1 experimental SAS data
Potassium voltage-gated channel subfamily B member 1 Kratky plot
Sample: Potassium voltage-gated channel subfamily B member 1 pentamer, 73 kDa Homo sapiens protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 5% v/v glycerol, 0.01% Triton X-100, 10 mM β-mercaptoethanol, pH: 8
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Jul 13
Pentameric assembly of the Kv2.1 tetramerization domain Acta Crystallographica Section D Structural Biology 78(6):792-802 (2022)
Xu Z, Khan S, Schnicker N, Baker S
RgGuinier 2.8 nm
Dmax 8.0 nm
VolumePorod 140 nm3

SASDLK7 – Bartonella effector protein (Bep1), 15 °C

UniProt ID: E6YFW2 (2-558) Bartonella effector protein (Bep) substrate of VirB T4SS
Bartonella effector protein (Bep) substrate of VirB T4SS experimental SAS data
GASBOR model
Sample: Bartonella effector protein (Bep) substrate of VirB T4SS monomer, 64 kDa Bartonella clarridgeiae (strain … protein
Buffer: 25 mM Hepes, 300 mM NaCl, 1 mM TCEP, 5% v/v glycerol, pH: 7.5
Experiment: SAXS data collected at Xenocs Xeuss 2.0 Q-Xoom, Center for Structural Studies, Heinrich-Heine-University on 2020 May 29
Structure and function of Bartonella effector protein 1: target and interdomain interactions University of Basel PhD thesis 15051 (2023)
Markus Huber, Jens Reiners
RgGuinier 4.1 nm
Dmax 13.4 nm
VolumePorod 83 nm3