Small Angle Scattering Biological Data Bank SASBDB

SASBDB entries for UniProt ID:

SASDRB3 – N-terminal RNA-binding domain (NTD) of nucleocapsid protein (N) complexed with 5'-genomic RNA Stem loop 4 of SARS-CoV-2 in HEPES conditions

UniProt ID: P0DTC9 (44-180) Nucleoprotein

UniProt ID: None (None-None) Stem loop 4 in the 5'-genomic end of SARS-CoV-2

NucleoproteinStem loop 4 in the 5'-genomic end of SARS-CoV-2 experimental SAS data

Nucleoprotein Stem loop 4 in the 5'-genomic end of SARS-CoV-2 Kratky plot

Sample:	Nucleoprotein monomer, 15 kDa Severe acute respiratory … protein Stem loop 4 in the 5'-genomic end of SARS-CoV-2 monomer, 14 kDa Severe acute respiratory … RNA
Buffer:	25 mM HEPES, 75 mM KCl, 2.5 mM NaNO3, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Nov 29

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5'-genomic RNA elements
Karthikeyan Dhamotharan

R_g^Guinier	2.7	nm
D_max	10.0	nm
Volume^Porod	46	nm³

SASDRC3 – Homo-oligomeric mixture of human myelin protein zero Ig domain

UniProt ID: P25189 (30-153) Myelin protein P0

Sample:	Myelin protein P0, 15 kDa Homo sapiens protein
Buffer:	50 mM NaCl, 1 mM EDTA, 20 mM TrisCl, pH: 7.6
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Jul 21

Homomeric interactions of the MPZ Ig domain and their relation to Charcot-Marie-Tooth disease Brain (2023)
Ptak C, Peterson T, Hopkins J, Ahern C, Shy M, Piper R

R_g^Guinier	2.9	nm
D_max	17.0	nm

SASDRD3 – Homo-oligomeric mixture of human myelin protein zero Ig domain (W53A, R74A, D75R mutant)

UniProt ID: P25189 (30-153) Myelin protein P0 (W53A, R74A, D75R)

Myelin protein P0 (W53A, R74A, D75R) experimental SAS data

Sample:	Myelin protein P0 (W53A, R74A, D75R), 14 kDa Homo sapiens protein
Buffer:	50 mM NaCl, 1 mM EDTA, 20 mM TrisCl, pH: 7.6
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 14

Homomeric interactions of the MPZ Ig domain and their relation to Charcot-Marie-Tooth disease Brain (2023)
Ptak C, Peterson T, Hopkins J, Ahern C, Shy M, Piper R

R_g^Guinier	1.9	nm
D_max	7.0	nm

SASDRE3 – Tissue Transglutaminase + Ca: Time-resolved 0ms

UniProt ID: P21980 (1-687) Protein-glutamine gamma-glutamyltransferase 2

Protein-glutamine gamma-glutamyltransferase 2 experimental SAS data

Protein-glutamine gamma-glutamyltransferase 2 Kratky plot

Sample:	Protein-glutamine gamma-glutamyltransferase 2, 77 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 100 mM NaCl, 10% glycerol, 1 mM DTT, pH: 7.5
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2021 Nov 19

Chaotic advection mixer for capturing transient states of diverse biological macromolecular systems with time-resolved small-angle X-ray scattering IUCrJ 10(3):363-375 (2023)
Zielinski K, Katz A, Calvey G, Pabit S, Milano S, Aplin C, San Emeterio J, Cerione R, Pollack L

R_g^Guinier	4.1	nm
D_max	16.0	nm
Volume^Porod	150	nm³

SASDRF3 – Tissue Transglutaminase + Ca: Time-resolved 32 ms

UniProt ID: P21980 (1-687) Protein-glutamine gamma-glutamyltransferase 2

Sample:	Protein-glutamine gamma-glutamyltransferase 2, 77 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 100 mM NaCl, 10% glycerol, 1 mM DTT, pH: 7.5
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2021 Nov 19

R_g^Guinier	4.1	nm
D_max	17.0	nm
Volume^Porod	170	nm³

SASDRG3 – Tissue Transglutaminase + Ca: Time-resolved 63 ms

UniProt ID: P21980 (1-687) Protein-glutamine gamma-glutamyltransferase 2

Sample:	Protein-glutamine gamma-glutamyltransferase 2, 77 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 100 mM NaCl, 10% glycerol, 1 mM DTT, pH: 7.5
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2021 Nov 19

R_g^Guinier	4.1	nm
D_max	18.0	nm
Volume^Porod	155	nm³

SASDRH3 – Tissue Transglutaminase + Ca: Time-resolved 100 ms

UniProt ID: P21980 (1-687) Protein-glutamine gamma-glutamyltransferase 2

Sample:	Protein-glutamine gamma-glutamyltransferase 2, 77 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 100 mM NaCl, 10% glycerol, 1 mM DTT, pH: 7.5
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2021 Nov 19

R_g^Guinier	4.1	nm
D_max	20.0	nm
Volume^Porod	190	nm³

SASDRJ3 – Tissue Transglutaminase + Ca: Time-resolved 316 ms

UniProt ID: P21980 (1-687) Protein-glutamine gamma-glutamyltransferase 2

Sample:	Protein-glutamine gamma-glutamyltransferase 2, 77 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 100 mM NaCl, 10% glycerol, 1 mM DTT, pH: 7.5
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2021 Nov 19

R_g^Guinier	4.5	nm
D_max	24.0	nm
Volume^Porod	200	nm³

SASDRK3 – Tissue Transglutaminase + Ca: Time-resolved 631 ms

UniProt ID: P21980 (1-687) Protein-glutamine gamma-glutamyltransferase 2

Sample:	Protein-glutamine gamma-glutamyltransferase 2, 77 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 100 mM NaCl, 10% glycerol, 1 mM DTT, pH: 7.5
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2021 Nov 19

R_g^Guinier	4.6	nm
D_max	26.0	nm
Volume^Porod	215	nm³

SASDRL3 – Tissue Transglutaminase + Ca: Time-resolved 1500 ms

UniProt ID: P21980 (1-687) Protein-glutamine gamma-glutamyltransferase 2

Sample:	Protein-glutamine gamma-glutamyltransferase 2, 77 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 100 mM NaCl, 10% glycerol, 1 mM DTT, pH: 7.5
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2021 Nov 19

R_g^Guinier	4.6	nm
D_max	28.0	nm
Volume^Porod	230	nm³

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