Small Angle Scattering Biological Data Bank SASBDB

SASDVB8 – C-terminal truncation mutant of N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF

N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF (Δ444-462) experimental SAS data

Sample:	N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF (Δ444-462) dimer, 107 kDa Aspergillus fumigatus (strain … protein
Buffer:	50 mM Tris, 200 mM NaCl, pH: 8
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2023 Jan 18

SidF, a dual substrate N5-acetyl-N5-hydroxy-L-ornithine transacetylase involved in Aspergillus fumigatus siderophore biosynthesis Journal of Structural Biology: X 11:100119 (2025)
Poonsiri T, Stransky J, Demitri N, Haas H, Cianci M, Benini S

R_g^Guinier	3.5	nm
D_max	15.0	nm
Volume^Porod	189	nm³

SASDVF8 – S9 peptidase form Mycobacterium phlei (8 mg/ml)

Sample:	Peptidase S9 tetramer, 304 kDa Mycolicibacterium phlei DSM … protein
Buffer:	10 mM Tris-HCl, 135 mM NaCl, pH: 8
Experiment:	SAXS data collected at BL-18, INDUS-2 on 2024 Mar 21

Structural and Functional Investigation of Putative Peptidase from Mycolicibacterium phlei : An Exclusive Endopeptidase among S9C Subfamily Biochemistry (2025)
Chandravanshi K, Jamdar S, Singh R, Kumar A, Mahato A, Agrawal R, Kumar S, Kumar A, Makde R

R_g^Guinier	5.2	nm
D_max	15.8	nm
Volume^Porod	559	nm³

SASDVG8 – S9 peptidase form Mycobacterium phlei (6 mg/ml)

Sample:	Peptidase S9 tetramer, 304 kDa Mycolicibacterium phlei DSM … protein
Buffer:	10 mM Tris-HCl, 135 mM NaCl, pH: 8
Experiment:	SAXS data collected at BL-18, INDUS-2 on 2024 Mar 21

R_g^Guinier	5.0	nm
D_max	15.7	nm
Volume^Porod	546	nm³

SASDVH8 – S9 peptidase form Mycobacterium phlei (4 mg/ml)

Sample:	Peptidase S9 tetramer, 304 kDa Mycolicibacterium phlei DSM … protein
Buffer:	10 mM Tris-HCl, 135 mM NaCl, pH: 8
Experiment:	SAXS data collected at BL-18, INDUS-2 on 2024 Mar 21

R_g^Guinier	5.1	nm
D_max	16.2	nm
Volume^Porod	563	nm³

SASDUC3 – Phosphorylated E3 ubiquitin-protein ligase Nedd4-2 in the absence of calcium

Isoform 5 of E3 ubiquitin-protein ligase NEDD4-like experimental SAS data

Sample:	Isoform 5 of E3 ubiquitin-protein ligase NEDD4-like monomer, 110 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 150 mM NaCl, 1 mM TCEP, 1 mM EDTA, 3% glycerol, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2023 Aug 17

Structural basis of ubiquitin ligase Nedd4-2 autoinhibition and regulation by calcium and 14-3-3 proteins Nature Communications 16(1) (2025)
Janosev M, Kosek D, Tekel A, Joshi R, Honzejkova K, Pohl P, Obsil T, Obsilova V

R_g^Guinier	4.9	nm
D_max	22.0	nm
Volume^Porod	206	nm³

SASDUD3 – Phosphorylated E3 ubiquitin-protein ligase Nedd4-2 in the presence of calcium

Isoform 5 of E3 ubiquitin-protein ligase NEDD4-like Kratky plot

Sample:	Isoform 5 of E3 ubiquitin-protein ligase NEDD4-like monomer, 110 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 150 mM NaCl, 1 mM TCEP, 1 mM CaCl2, 3% glycerol, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2023 Aug 17

R_g^Guinier	4.9	nm
D_max	22.5	nm
Volume^Porod	201	nm³

SASDQY7 – StyI glutathione S-transferase

GST N-terminal domain-containing protein experimental SAS data

Sample:	GST N-terminal domain-containing protein dimer, 60 kDa Gordonia rubripertincta protein
Buffer:	10 mM Tris, 300 mM NaCl,, pH: 8
Experiment:	SAXS data collected at Xenocs Xeuss 2.0 Q-Xoom, Center for Structural Studies, Heinrich-Heine-University on 2022 Jan 20

Glutathione S-Transferase Mediated Epoxide Conversion: Structural Insights into an Enantioselective Catalyst
Jens Reiners

R_g^Guinier	2.7	nm
D_max	9.2	nm
Volume^Porod	91	nm³

SASDSL2 – Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 (EMAPII) at pH 8

Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 experimental SAS data

Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 (EMAPII) at pH 8 Rg histogram

Sample:	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 monomer, 20 kDa Homo sapiens protein
Buffer:	50 mM Tris, 150 mM NaCl, 1mM DTT, pH: 8
Experiment:	SAXS data collected at Xenocs Xeuss 2.0 with MetalJet, Department of Macromolecular Physics, Faculty of Physics, Adam Mickiewicz University on 2022 Oct 12

Solution structure of the EMAPII domain of human aminoacyl-tRNA synthetase complex
Michal Taube

R_g^Guinier	1.9	nm
D_max	7.7	nm
Volume^Porod	27	nm³

SASDSV2 – spikemoss tandem zinc finger (TZF) domain, pH 8 at 5.5 mg/mL

C3H1-type domain-containing protein experimental SAS data

C3H1-type domain-containing protein Kratky plot

Sample:	C3H1-type domain-containing protein monomer, 8 kDa Selaginella moellendorffii protein
Buffer:	20 mM sodium phosphate, 100 mM KCl, 25 µM ZnSO4, 2 mM β-mercaptoethanol, 5 % glycerol, pH: 8
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Nov 9

Solution scattering of the tandem zinc finger (TZF) domain from the tristetraprolin (TTP) family member found in Selaginella moellendorffii (spikemoss) in the presence and absence of 9-mer RNA
Stephanie Hicks

R_g^Guinier	1.8	nm
D_max	7.3	nm
Volume^Porod	15	nm³

SASDSW2 – spikemoss tandem zinc finger (TZF) domain, pH 8 at 4.1 mg/mL

Sample:	C3H1-type domain-containing protein monomer, 8 kDa Selaginella moellendorffii protein
Buffer:	20 mM sodium phosphate, 100 mM KCl, 25 µM ZnSO4, 2 mM β-mercaptoethanol, 5 % glycerol, pH: 8
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Nov 9

R_g^Guinier	1.7	nm
D_max	7.1	nm
Volume^Porod	14	nm³

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