Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Hybrid

SASDPW7 – FAD-dependent monooxygenase from Stenotrophomonas maltophilia (with reducing agent)

Monooxygenase (M154I, A283T) experimental SAS data

Sample:	Monooxygenase (M154I, A283T) monomer, 39 kDa Stenotrophomonas maltophilia protein
Buffer:	25 mM Bis-Tris, 150 mM NaCl, 30 mM DTT, pH: 6.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2022 Jan 7

Tetracycline-modifying enzyme Sm TetX from Stenotrophomonas maltophilia Acta Crystallographica Section F Structural Biology Communications 79(7):180-192 (2023)
Malý M, Kolenko P, Stránský J, Švecová L, Dušková J, Koval' T, Skálová T, Trundová M, Adámková K, Černý J, Božíková P, Dohnálek J

R_g^Guinier	2.4	nm
D_max	6.4	nm
Volume^Porod	64	nm³

SASDRE6 – Ras GTPase-activating protein 1 (p120RasGAP, amino acids 174–1047)

Ras GTPase-activating protein 1 experimental SAS data

Sample:	Ras GTPase-activating protein 1 monomer, 101 kDa Homo sapiens protein
Buffer:	20 mM Tris pH 8, 150 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Nov 4

Diverse p120RasGAP interactions with doubly phosphorylated partners EphB4, p190RhoGAP and Dok1 Journal of Biological Chemistry :105098 (2023)
Vish K, Stiegler A, Boggon T

R_g^Guinier	4.0	nm
D_max	14.0	nm
Volume^Porod	172	nm³

SASDRR8 – Сhloroplast FOF1-ATP synthase from Spinacia oleracea purified by anion-exchange chromatography (~ 300 mM NaCl)

ATP synthase subunit alpha, chloroplasticATP synthase subunit beta, chloroplasticATP synthase gamma chain, chloroplasticATP synthase delta chain, chloroplasticATP synthase epsilon chain, chloroplasticATP synthase subunit a, chloroplasticATP synthase subunit b, chloroplasticATP synthase subunit b', chloroplasticATP synthase subunit c, chloroplastic4-trans-(4-trans-Propylcyclohexyl)-cyclohexyl α-maltoside experimental SAS data

Sample:	ATP synthase subunit alpha, chloroplastic trimer, 166 kDa Spinacia oleracea protein ATP synthase subunit beta, chloroplastic trimer, 161 kDa Spinacia oleracea protein ATP synthase gamma chain, chloroplastic monomer, 40 kDa Spinacia oleracea protein ATP synthase delta chain, chloroplastic monomer, 28 kDa Spinacia oleracea protein ATP synthase epsilon chain, chloroplastic monomer, 15 kDa Spinacia oleracea protein ATP synthase subunit a, chloroplastic monomer, 27 kDa Spinacia oleracea protein ATP synthase subunit b, chloroplastic monomer, 21 kDa Spinacia oleracea protein ATP synthase subunit b', chloroplastic monomer, 24 kDa Spinacia oleracea protein ATP synthase subunit c, chloroplastic 14-mer, 112 kDa Spinacia oleracea protein 4-trans-(4-trans-Propylcyclohexyl)-cyclohexyl α-maltoside 0, 283 kDa
Buffer:	300 mM NaCl, 30 mM HEPES, 2 mM MgCl2, 0.04% (w/v) tPCC-α-M, pH: 8
Experiment:	SAXS data collected at Rigaku MicroMax 007-HF, Moscow Institute of Physics and Technology (MIPT) on 2020 Oct 3

I-Shaped Dimers of a Plant Chloroplast FOF1-ATP Synthase in Response to Changes in Ionic Strength International Journal of Molecular Sciences 24(13):10720 (2023)
Osipov S, Ryzhykau Y, Zinovev E, Minaeva A, Ivashchenko S, Verteletskiy D, Sudarev V, Kuklina D, Nikolaev M, Semenov Y, Zagryadskaya Y, Okhrimenko I, Gette M, Dronova E, Shishkin A, Dencher N, Kuklin A, Ivanovich V, Uversky V, Vlasov A

R_g^Guinier	6.6	nm
D_max	27.5	nm
Volume^Porod	927	nm³

SASDRS8 – Сhloroplast FOF1-ATP synthase from Spinacia oleracea at 150 mM NaCl

Sample:	ATP synthase subunit alpha, chloroplastic trimer, 166 kDa Spinacia oleracea protein ATP synthase subunit beta, chloroplastic trimer, 161 kDa Spinacia oleracea protein ATP synthase gamma chain, chloroplastic monomer, 40 kDa Spinacia oleracea protein ATP synthase delta chain, chloroplastic monomer, 28 kDa Spinacia oleracea protein ATP synthase epsilon chain, chloroplastic monomer, 15 kDa Spinacia oleracea protein ATP synthase subunit a, chloroplastic monomer, 27 kDa Spinacia oleracea protein ATP synthase subunit b, chloroplastic monomer, 21 kDa Spinacia oleracea protein ATP synthase subunit b', chloroplastic monomer, 24 kDa Spinacia oleracea protein ATP synthase subunit c, chloroplastic 14-mer, 112 kDa Spinacia oleracea protein 4-trans-(4-trans-Propylcyclohexyl)-cyclohexyl α-maltoside 0, 283 kDa
Buffer:	150 mM NaCl, 30 mM HEPES, 2 mM MgCl2, 0.04% (w/v) tPCC-α-M, pH: 8
Experiment:	SAXS data collected at Rigaku MicroMax 007-HF, Moscow Institute of Physics and Technology (MIPT) on 2020 Oct 3

R_g^Guinier	9.6	nm
D_max	41.5	nm
Volume^Porod	1506	nm³

SASDRT8 – Сhloroplast FOF1-ATP synthase from Spinacia oleracea at 250 mM NaCl

Sample:	ATP synthase subunit alpha, chloroplastic trimer, 166 kDa Spinacia oleracea protein ATP synthase subunit beta, chloroplastic trimer, 161 kDa Spinacia oleracea protein ATP synthase gamma chain, chloroplastic monomer, 40 kDa Spinacia oleracea protein ATP synthase delta chain, chloroplastic monomer, 28 kDa Spinacia oleracea protein ATP synthase epsilon chain, chloroplastic monomer, 15 kDa Spinacia oleracea protein ATP synthase subunit a, chloroplastic monomer, 27 kDa Spinacia oleracea protein ATP synthase subunit b, chloroplastic monomer, 21 kDa Spinacia oleracea protein ATP synthase subunit b', chloroplastic monomer, 24 kDa Spinacia oleracea protein ATP synthase subunit c, chloroplastic 14-mer, 112 kDa Spinacia oleracea protein 4-trans-(4-trans-Propylcyclohexyl)-cyclohexyl α-maltoside 0, 283 kDa
Buffer:	250 mM NaCl, 30 mM HEPES, 2 mM MgCl2, 0.04% (w/v) tPCC-α-M, pH: 8
Experiment:	SAXS data collected at Rigaku MicroMax 007-HF, Moscow Institute of Physics and Technology (MIPT) on 2020 Oct 3

R_g^Guinier	7.4	nm
D_max	33.0	nm
Volume^Porod	949	nm³

SASDRU8 – Сhloroplast FOF1-ATP synthase from Spinacia oleracea at 300 mM NaCl

Sample:	ATP synthase subunit alpha, chloroplastic trimer, 166 kDa Spinacia oleracea protein ATP synthase subunit beta, chloroplastic trimer, 161 kDa Spinacia oleracea protein ATP synthase gamma chain, chloroplastic monomer, 40 kDa Spinacia oleracea protein ATP synthase delta chain, chloroplastic monomer, 28 kDa Spinacia oleracea protein ATP synthase epsilon chain, chloroplastic monomer, 15 kDa Spinacia oleracea protein ATP synthase subunit a, chloroplastic monomer, 27 kDa Spinacia oleracea protein ATP synthase subunit b, chloroplastic monomer, 21 kDa Spinacia oleracea protein ATP synthase subunit b', chloroplastic monomer, 24 kDa Spinacia oleracea protein ATP synthase subunit c, chloroplastic 14-mer, 112 kDa Spinacia oleracea protein 4-trans-(4-trans-Propylcyclohexyl)-cyclohexyl α-maltoside 0, 283 kDa
Buffer:	300 mM NaCl, 30 mM HEPES, 2 mM MgCl2, 0.04% (w/v) tPCC-α-M, pH: 8
Experiment:	SAXS data collected at Rigaku MicroMax 007-HF, Moscow Institute of Physics and Technology (MIPT) on 2020 Oct 3

R_g^Guinier	7.8	nm
D_max	39.5	nm
Volume^Porod	1127	nm³

SASDRV8 – Сhloroplast FOF1-ATP synthase from Spinacia oleracea at 350 mM NaCl

Sample:	ATP synthase subunit alpha, chloroplastic trimer, 166 kDa Spinacia oleracea protein ATP synthase subunit beta, chloroplastic trimer, 161 kDa Spinacia oleracea protein ATP synthase gamma chain, chloroplastic monomer, 40 kDa Spinacia oleracea protein ATP synthase delta chain, chloroplastic monomer, 28 kDa Spinacia oleracea protein ATP synthase epsilon chain, chloroplastic monomer, 15 kDa Spinacia oleracea protein ATP synthase subunit a, chloroplastic monomer, 27 kDa Spinacia oleracea protein ATP synthase subunit b, chloroplastic monomer, 21 kDa Spinacia oleracea protein ATP synthase subunit b', chloroplastic monomer, 24 kDa Spinacia oleracea protein ATP synthase subunit c, chloroplastic 14-mer, 112 kDa Spinacia oleracea protein 4-trans-(4-trans-Propylcyclohexyl)-cyclohexyl α-maltoside 0, 283 kDa
Buffer:	350 mM NaCl, 30 mM HEPES, 2 mM MgCl2, 0.04% (w/v) tPCC-α-M, pH: 8
Experiment:	SAXS data collected at Rigaku MicroMax 007-HF, Moscow Institute of Physics and Technology (MIPT) on 2020 Oct 3

R_g^Guinier	8.9	nm
D_max	44.5	nm
Volume^Porod	1150	nm³

SASDRW8 – Сhloroplast FOF1-ATP synthase from Spinacia oleracea at 450 mM NaCl

Sample:	ATP synthase subunit alpha, chloroplastic trimer, 166 kDa Spinacia oleracea protein ATP synthase subunit beta, chloroplastic trimer, 161 kDa Spinacia oleracea protein ATP synthase gamma chain, chloroplastic monomer, 40 kDa Spinacia oleracea protein ATP synthase delta chain, chloroplastic monomer, 28 kDa Spinacia oleracea protein ATP synthase epsilon chain, chloroplastic monomer, 15 kDa Spinacia oleracea protein ATP synthase subunit a, chloroplastic monomer, 27 kDa Spinacia oleracea protein ATP synthase subunit b, chloroplastic monomer, 21 kDa Spinacia oleracea protein ATP synthase subunit b', chloroplastic monomer, 24 kDa Spinacia oleracea protein ATP synthase subunit c, chloroplastic 14-mer, 112 kDa Spinacia oleracea protein 4-trans-(4-trans-Propylcyclohexyl)-cyclohexyl α-maltoside 0, 283 kDa
Buffer:	450 mM NaCl, 30 mM HEPES, 2 mM MgCl2, 0.04% (w/v) tPCC-α-M, pH: 8
Experiment:	SAXS data collected at Rigaku MicroMax 007-HF, Moscow Institute of Physics and Technology (MIPT) on 2020 Oct 3

R_g^Guinier	10.8	nm
D_max	46.5	nm
Volume^Porod	1703	nm³

SASDRN5 – Nucleolar RNA Chaperone-Like Protein 1 (NURC1)

AT5g04600/T32M21_200 experimental SAS data

Sample:	AT5g04600/T32M21_200 monomer, 25 kDa Arabidopsis thaliana protein
Buffer:	50 mM HNa2PO4, 300 mM NaCl, 5% glycerol (v/v), 1 mM DTT, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Jun 22

Structural and functional analysis of a plant nucleolar RNA chaperone-like protein. Sci Rep 13(1):9656 (2023)
Fernandes R, Ostendorp A, Ostendorp S, Mehrmann J, Falke S, Graewert MA, Weingartner M, Kehr J, Hoth S

R_g^Guinier	3.5	nm
D_max	12.4	nm
Volume^Porod	66	nm³

SASDNJ5 – Full length 3-phosphoinositide-dependent protein kinase (PDK1)

3-phosphoinositide-dependent protein kinase 1 experimental SAS data

Sample:	3-phosphoinositide-dependent protein kinase 1 monomer, 65 kDa Homo sapiens protein
Buffer:	20 mM Tris-HCl pH 7.4, 250 mM NaCl, 1 mM DTT, pH: 7.4
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Mar 26

Modulation of the substrate specificity of the kinase PDK1 by distinct conformations of the full-length protein Science Signaling 16(789) (2023)
Sacerdoti M, Gross L, Riley A, Zehnder K, Ghode A, Klinke S, Anand G, Paris K, Winkel A, Herbrand A, Godage H, Cozier G, Süß E, Schulze J, Pastor-Flores D, Bollini M, Cappellari M, Svergun D, Gräwert M, Aramendia P, Leroux A, Potter B, Camacho C, Biondi R

R_g^Guinier	3.5	nm
D_max	11.2	nm
Volume^Porod	107	nm³

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