Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: No model

SASDVS6 – SARS-CoV-2 N-protein InterDomain Linker (IDL, amino acids 176-245): 1666.7 µM

Sample:	Nucleoprotein dimer, 17 kDa Severe acute respiratory … protein
Buffer:	100 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, pH: 8
Experiment:	SAXS data collected at BM29, ESRF on 2023 Jan 29

Dynamic ensembles of SARS-CoV-2 N-protein reveal head-to-head coiled-coil-driven oligomerization and phase separation. Nucleic Acids Res 53(11) (2025)
Hernandez G, Martins ML, Fernandes NP, Veloso T, Lopes J, Gomes T, Cordeiro TN

R_g^Guinier	4.5	nm
D_max	19.0	nm
Volume^Porod	117	nm³

SASDVT6 – SARS-CoV-2 N-protein InterDomain Linker (IDL, amino acids 176-245) L223P, L227P and L230P triple mutant: 1667 µM

Nucleoprotein (L223P, L227P, L230P) experimental SAS data

Nucleoprotein (L223P, L227P, L230P) Kratky plot

Sample:	Nucleoprotein (L223P, L227P, L230P) monomer, 8 kDa Severe acute respiratory … protein
Buffer:	100 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, pH: 8
Experiment:	SAXS data collected at BM29, ESRF on 2023 Jan 29

R_g^Guinier	2.8	nm
D_max	12.0	nm
Volume^Porod	14	nm³

SASDVU6 – SARS-CoV-2 N-protein (N1-245; amino acids 1-245): 167 µM

Sample:	Nucleoprotein dimer, 55 kDa Severe acute respiratory … protein
Buffer:	100 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, pH: 8
Experiment:	SAXS data collected at B21, Diamond Light Source on 2022 May 13

R_g^Guinier	5.2	nm
D_max	20.5	nm
Volume^Porod	121	nm³

SASDUD3 – Phosphorylated E3 ubiquitin-protein ligase Nedd4-2 in the presence of calcium

Isoform 5 of E3 ubiquitin-protein ligase NEDD4-like experimental SAS data

Isoform 5 of E3 ubiquitin-protein ligase NEDD4-like Kratky plot

Sample:	Isoform 5 of E3 ubiquitin-protein ligase NEDD4-like monomer, 110 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 150 mM NaCl, 1 mM TCEP, 1 mM CaCl2, 3% glycerol, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2023 Aug 17

Structural basis of ubiquitin ligase Nedd4-2 autoinhibition and regulation by calcium and 14-3-3 proteins Nature Communications 16(1) (2025)
Janosev M, Kosek D, Tekel A, Joshi R, Honzejkova K, Pohl P, Obsil T, Obsilova V

R_g^Guinier	4.9	nm
D_max	22.5	nm
Volume^Porod	201	nm³

SASDSV2 – spikemoss tandem zinc finger (TZF) domain, pH 8 at 5.5 mg/mL

C3H1-type domain-containing protein experimental SAS data

C3H1-type domain-containing protein Kratky plot

Sample:	C3H1-type domain-containing protein monomer, 8 kDa Selaginella moellendorffii protein
Buffer:	20 mM sodium phosphate, 100 mM KCl, 25 µM ZnSO4, 2 mM β-mercaptoethanol, 5 % glycerol, pH: 8
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Nov 9

Solution scattering of the tandem zinc finger (TZF) domain from the tristetraprolin (TTP) family member found in Selaginella moellendorffii (spikemoss) in the presence and absence of 9-mer RNA
Stephanie Hicks

R_g^Guinier	1.8	nm
D_max	7.3	nm
Volume^Porod	15	nm³

SASDSW2 – spikemoss tandem zinc finger (TZF) domain, pH 8 at 4.1 mg/mL

Sample:	C3H1-type domain-containing protein monomer, 8 kDa Selaginella moellendorffii protein
Buffer:	20 mM sodium phosphate, 100 mM KCl, 25 µM ZnSO4, 2 mM β-mercaptoethanol, 5 % glycerol, pH: 8
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Nov 9

R_g^Guinier	1.7	nm
D_max	7.1	nm
Volume^Porod	14	nm³

SASDSX2 – spikemoss tandem zinc finger (TZF) domain, pH 8 at 2.75 mg/mL

Sample:	C3H1-type domain-containing protein monomer, 8 kDa Selaginella moellendorffii protein
Buffer:	20 mM sodium phosphate, 100 mM KCl, 25 µM ZnSO4, 2 mM β-mercaptoethanol, 5 % glycerol, pH: 8
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Nov 9

R_g^Guinier	1.7	nm
D_max	7.1	nm
Volume^Porod	14	nm³

SASDSY2 – single stranded 9-mer RNA: tristetraprolin TZF domain optimal target sequence, pH 8 at 17.1 mg/mL

single stranded 9-mer RNA: tristetraprolin (TTP) optimal target sequence experimental SAS data

single stranded 9-mer RNA: tristetraprolin (TTP) optimal target sequence Kratky plot

Sample:	Single stranded 9-mer RNA: tristetraprolin (TTP) optimal target sequence monomer, 3 kDa synthetic construct RNA
Buffer:	20 mM sodium phosphate, 100 mM KCl, 25 µM ZnSO4, 2 mM β-mercaptoethanol, 5 % glycerol, pH: 8
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Mar 19

R_g^Guinier	1.0	nm
D_max	3.5	nm
Volume^Porod	5	nm³

SASDSZ2 – single stranded 9-mer RNA: tristetraprolin TZF domain optimal target sequence, pH 8 at 17.1 mg/mL (repeat)

Sample:	Single stranded 9-mer RNA: tristetraprolin (TTP) optimal target sequence monomer, 3 kDa synthetic construct RNA
Buffer:	20 mM sodium phosphate, 100 mM KCl, 25 µM ZnSO4, 2 mM β-mercaptoethanol, 5 % glycerol, pH: 8
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Mar 19

R_g^Guinier	1.0	nm
D_max	3.5	nm
Volume^Porod	5	nm³

SASDS23 – single stranded 9-mer RNA: tristetraprolin TZF domain optimal target sequence, pH 8 at 14 mg/mL

Sample:	Single stranded 9-mer RNA: tristetraprolin (TTP) optimal target sequence monomer, 3 kDa synthetic construct RNA
Buffer:	20 mM sodium phosphate, 100 mM KCl, 25 µM ZnSO4, 2 mM β-mercaptoethanol, 5 % glycerol, pH: 8
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Mar 19

R_g^Guinier	1.0	nm
D_max	3.2	nm
Volume^Porod	5	nm³

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