Browse by ORGANISM: Homo sapiens (Human)

SASDEK5 – AMP-bound human adenylosuccinate lyase (ADSL)

Adenylosuccinate Lyase experimental SAS data
Adenylosuccinate Lyase Kratky plot
Sample: Adenylosuccinate Lyase tetramer, 221 kDa Homo sapiens protein
Buffer: 10 mM HEPES, 100 mM NaCl, 1 mM DTT, 1 mM AMP, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Jul 24
Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Sci Rep 8(1):18008 (2018)
Van Laer B, Kapp U, Soler-Lopez M, Moczulska K, Pääbo S, Leonard G, Mueller-Dieckmann C
RgGuinier 3.7 nm
VolumePorod 292 nm3

SASDEL5 – AICAR-bound human adenylosuccinate lyase (ADSL)

Adenylosuccinate Lyase experimental SAS data
Adenylosuccinate Lyase Kratky plot
Sample: Adenylosuccinate Lyase tetramer, 221 kDa Homo sapiens protein
Buffer: 10 mM HEPES, 100 mM NaCl, 1 mM DTT, 1 mM 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR), pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Jul 24
Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Sci Rep 8(1):18008 (2018)
Van Laer B, Kapp U, Soler-Lopez M, Moczulska K, Pääbo S, Leonard G, Mueller-Dieckmann C
RgGuinier 3.7 nm
VolumePorod 291 nm3

SASDEM5 – apo neanderthal adenylosuccinate lyase (ADSL)

Adenylosuccinate lyase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Adenylosuccinate lyase tetramer, 221 kDa Homo sapiens neanderthalensis protein
Buffer: 10 mM HEPES, 100 mM NaCl, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2015 Nov 13
Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Sci Rep 8(1):18008 (2018)
Van Laer B, Kapp U, Soler-Lopez M, Moczulska K, Pääbo S, Leonard G, Mueller-Dieckmann C
RgGuinier 3.7 nm
VolumePorod 304 nm3

SASDEN5 – AMP/fumarate-bound neanderthal adenylosuccinate lyase (ADSL)

Adenylosuccinate lyase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Adenylosuccinate lyase tetramer, 221 kDa Homo sapiens neanderthalensis protein
Buffer: 10 mM HEPES, 100 mM NaCl, 1 mM DTT, 1mM AMP, 1mM Fumarate, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Jul 24
Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Sci Rep 8(1):18008 (2018)
Van Laer B, Kapp U, Soler-Lopez M, Moczulska K, Pääbo S, Leonard G, Mueller-Dieckmann C
RgGuinier 3.7 nm
VolumePorod 258 nm3

SASDEP5 – AMP-bound neanderthal adenylosuccinate lyase (ADSL)

Adenylosuccinate lyase experimental SAS data
Adenylosuccinate lyase Kratky plot
Sample: Adenylosuccinate lyase tetramer, 221 kDa Homo sapiens neanderthalensis protein
Buffer: 10 mM HEPES, 100 mM NaCl, 1 mM DTT, 1 mM AMP, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Jul 24
Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Sci Rep 8(1):18008 (2018)
Van Laer B, Kapp U, Soler-Lopez M, Moczulska K, Pääbo S, Leonard G, Mueller-Dieckmann C
RgGuinier 3.7 nm
VolumePorod 294 nm3

SASDEQ5 – AICAR-bound neanderthal adenylosuccinate lyase (ADSL)

Adenylosuccinate lyase experimental SAS data
Adenylosuccinate lyase Kratky plot
Sample: Adenylosuccinate lyase tetramer, 221 kDa Homo sapiens neanderthalensis protein
Buffer: 10 mM HEPES, 100 mM NaCl, 1 mM DTT, 1 mM 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR), pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Jul 24
Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Sci Rep 8(1):18008 (2018)
Van Laer B, Kapp U, Soler-Lopez M, Moczulska K, Pääbo S, Leonard G, Mueller-Dieckmann C
RgGuinier 3.7 nm
VolumePorod 292 nm3

SASDER5 – AICAR/fumarate-bound neanderthal adenylosuccinate lyase (ADSL)

Adenylosuccinate lyase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Adenylosuccinate lyase tetramer, 221 kDa Homo sapiens neanderthalensis protein
Buffer: 10 mM HEPES, 100 mM NaCl, 1 mM DTT, 1 mM 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR), 1mM Fumarate, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Jul 24
Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Sci Rep 8(1):18008 (2018)
Van Laer B, Kapp U, Soler-Lopez M, Moczulska K, Pääbo S, Leonard G, Mueller-Dieckmann C
RgGuinier 3.6 nm
VolumePorod 252 nm3

SASDDM9 – lipoprotein lipase–GPIHBP1 complex

Lipoprotein lipaseGlycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1 experimental SAS data
DAMMIF model
Sample: Lipoprotein lipase dimer, 101 kDa Homo sapiens protein
Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1 dimer, 29 kDa Homo sapiens protein
Buffer: 10 mM BisTris, 150 mM NaCl, 4 mM CaCl2, 10% glycerol, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Dec 2
Structure of the lipoprotein lipase-GPIHBP1 complex that mediates plasma triglyceride hydrolysis. Proc Natl Acad Sci U S A (2018)
Birrane G, Beigneux AP, Dwyer B, Strack-Logue B, Kristensen KK, Francone OL, Fong LG, Mertens HDT, Pan CQ, Ploug M, Young SG, Meiyappan M
RgGuinier 5.5 nm
Dmax 19.0 nm
VolumePorod 319 nm3

SASDCR2 – Bromodomain-containing protein 4 (BRD4) tandem bromodomains

Bromodomain-containing protein 4 experimental SAS data
DAMMIN model
Sample: Bromodomain-containing protein 4 monomer, 47 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2% glycerol, 0.5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2017 Jan 13
Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains. Mol Cell (2018)
Lambert JP, Picaud S, Fujisawa T, Hou H, Savitsky P, Uusküla-Reimand L, Gupta GD, Abdouni H, Lin ZY, Tucholska M, Knight JDR, Gonzalez-Badillo B, St-Denis N, Newman JA, Stucki M, Pelletier L, Bandeira N, Wilson MD, Filippakopoulos P, Gingras AC
RgGuinier 6.3 nm
Dmax 22.0 nm
VolumePorod 251 nm3

SASDCS2 – Bromodomain-containing protein 3 (BRD3) tandem bromodomains

Bromodomain-containing protein 3 experimental SAS data
DAMMIN model
Sample: Bromodomain-containing protein 3 monomer, 44 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2% glycerol, 0.5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2017 Jan 13
Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains. Mol Cell (2018)
Lambert JP, Picaud S, Fujisawa T, Hou H, Savitsky P, Uusküla-Reimand L, Gupta GD, Abdouni H, Lin ZY, Tucholska M, Knight JDR, Gonzalez-Badillo B, St-Denis N, Newman JA, Stucki M, Pelletier L, Bandeira N, Wilson MD, Filippakopoulos P, Gingras AC
RgGuinier 6.2 nm
Dmax 21.5 nm
VolumePorod 210 nm3