Browse by ORGANISM: other species

SASDUV8 – HIV-1 ²H-DIS-C:¹H-DIS-Gk RNA heterocomplex (DIS-Gk contrast matched in 65% v/v D₂O - SANS data)

HIV-1 dimerization initiation site with a CCCCCC apical loopHIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension experimental SAS data
RNAMASONRY model
Sample: HIV-1 dimerization initiation site with a CCCCCC apical loop monomer, 9 kDa RNA
HIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension monomer, 21 kDa RNA
Buffer: 50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment: SANS data collected at CG-3, High Flux Isotope Reactor on 2022 Oct 5
Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering. Structure (2025)
Munsayac A, Leite WC, Hopkins JB, Hall I, O'Neill HM, Keane SC
RgGuinier 1.6 nm
Dmax 5.3 nm

SASDUW8 – HIV-1 ¹H-DIS-C:²H(42%)-DIS-Gk RNA heterocomplex (DIS-Gk contrast matched in 90% v/v D₂O - SANS data)

HIV-1 dimerization initiation site with a CCCCCC apical loopHIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension experimental SAS data
RNAMASONRY model
Sample: HIV-1 dimerization initiation site with a CCCCCC apical loop monomer, 9 kDa RNA
HIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension monomer, 21 kDa RNA
Buffer: 50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment: SANS data collected at CG-3, High Flux Isotope Reactor on 2023 Sep 15
Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering. Structure (2025)
Munsayac A, Leite WC, Hopkins JB, Hall I, O'Neill HM, Keane SC
RgGuinier 1.4 nm
Dmax 4.6 nm

SASDUX8 – HIV-1 ²H(42%)-DIS-C:¹H-DIS-Gk RNA heterocomplex (DIS-C contrast matched in 90% v/v D₂O - SANS data)

HIV-1 dimerization initiation site with a CCCCCC apical loopHIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension experimental SAS data
RNAMASONRY model
Sample: HIV-1 dimerization initiation site with a CCCCCC apical loop monomer, 9 kDa RNA
HIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension monomer, 21 kDa RNA
Buffer: 50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment: SANS data collected at CG-3, High Flux Isotope Reactor on 2023 Sep 15
Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering. Structure (2025)
Munsayac A, Leite WC, Hopkins JB, Hall I, O'Neill HM, Keane SC
RgGuinier 2.9 nm
Dmax 9.7 nm

SASDVZ3 – SARS-CoV2 RNA pseudoknot at 4 mg/mL

SARS-CoV2 RNA pseudoknot experimental SAS data
SARS-CoV2 RNA pseudoknot Kratky plot
Sample: SARS-CoV2 RNA pseudoknot monomer, 22 kDa Severe acute respiratory … RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, pH: 6.2
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Nov 22
Optimization of Structure‐Guided Development of Chemical Probes for the Pseudoknot RNA of the Frameshift Element in SARS‐CoV‐2 Angewandte Chemie International Edition (2025)
Ceylan B, Adam J, Toews S, Kaiser F, Dörr J, Scheppa D, Tants J, Smart A, Schoth J, Philipp S, Stirnal E, Ferner J, Richter C, Sreeramulu S, Caliskan N, Schlundt A, Weigand J, Göbel M, Wacker A, Schwalbe H
RgGuinier 2.3 nm
Dmax 7.9 nm
VolumePorod 29 nm3

SASDV24 – SARS-CoV2 RNA pseudoknot at 2 mg/mL

SARS-CoV2 RNA pseudoknot experimental SAS data
SARS-CoV2 RNA pseudoknot Kratky plot
Sample: SARS-CoV2 RNA pseudoknot monomer, 22 kDa Severe acute respiratory … RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, pH: 6.2
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Nov 22
Optimization of Structure‐Guided Development of Chemical Probes for the Pseudoknot RNA of the Frameshift Element in SARS‐CoV‐2 Angewandte Chemie International Edition (2025)
Ceylan B, Adam J, Toews S, Kaiser F, Dörr J, Scheppa D, Tants J, Smart A, Schoth J, Philipp S, Stirnal E, Ferner J, Richter C, Sreeramulu S, Caliskan N, Schlundt A, Weigand J, Göbel M, Wacker A, Schwalbe H
RgGuinier 2.5 nm
Dmax 8.9 nm
VolumePorod 32 nm3

SASDV34 – SARS-CoV2 RNA pseudoknot at 1 mg/mL

SARS-CoV2 RNA pseudoknot experimental SAS data
SARS-CoV2 RNA pseudoknot Kratky plot
Sample: SARS-CoV2 RNA pseudoknot monomer, 22 kDa Severe acute respiratory … RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, pH: 6.2
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Nov 22
Optimization of Structure‐Guided Development of Chemical Probes for the Pseudoknot RNA of the Frameshift Element in SARS‐CoV‐2 Angewandte Chemie International Edition (2025)
Ceylan B, Adam J, Toews S, Kaiser F, Dörr J, Scheppa D, Tants J, Smart A, Schoth J, Philipp S, Stirnal E, Ferner J, Richter C, Sreeramulu S, Caliskan N, Schlundt A, Weigand J, Göbel M, Wacker A, Schwalbe H
RgGuinier 2.5 nm
Dmax 9.5 nm
VolumePorod 32 nm3

SASDU85 – Wild-type phosphoserine phosphatase RsbU dimer

Phosphoserine phosphatase RsbU experimental SAS data
MULTIFOXS model
Sample: Phosphoserine phosphatase RsbU dimer, 77 kDa Bacillus subtilis (strain … protein
Buffer: 20 mM HEPES, 100 mM NaCl, 5 mM DTT, pH: 7.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2023 Feb 24
A General Mechanism for Initiating the General Stress Response in Bacteria. bioRxiv (2025)
Baral R, Ho K, Kumar RP, Hopkins JB, Watkins MB, LaRussa S, Caban-Penix S, Calderone LA, Bradshaw N
RgGuinier 3.9 nm
Dmax 14.3 nm
VolumePorod 117 nm3

SASDU95 – Hyperactive variant of phosphoserine phosphatase RsbU (Q94L) bound to the activator serine/threonine-protein kinase RsbT (heterotetrameric complex)

Serine/threonine-protein kinase RsbTPhosphoserine phosphatase RsbU (Q94L) experimental SAS data
Serine/threonine-protein kinase RsbT Phosphoserine phosphatase RsbU (Q94L) Kratky plot
Sample: Serine/threonine-protein kinase RsbT dimer, 29 kDa Bacillus subtilis (strain … protein
Phosphoserine phosphatase RsbU (Q94L) dimer, 77 kDa Bacillus subtilis (strain … protein
Buffer: 20 mM HEPES, 100 mM NaCl, 5 mM DTT, pH: 7.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2023 Feb 24
A General Mechanism for Initiating the General Stress Response in Bacteria. bioRxiv (2025)
Baral R, Ho K, Kumar RP, Hopkins JB, Watkins MB, LaRussa S, Caban-Penix S, Calderone LA, Bradshaw N
RgGuinier 3.5 nm
Dmax 12.3 nm
VolumePorod 119 nm3

SASDWK4 – Shewanella benthica hemoglobin

Group 1 truncated hemoglobin (C51S, C71S) experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Group 1 truncated hemoglobin (C51S, C71S), 13 kDa Shewanella benthica KT99 protein
Buffer: 14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment: SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2022 May 1
Extremophilic hemoglobins: The structure of Shewanella benthica truncated hemoglobin N Journal of Biological Chemistry :108223 (2025)
Martinez Grundman J, Schultz T, Schlessman J, Johnson E, Gillilan R, Lecomte J
RgGuinier 1.8 nm
Dmax 5.8 nm
VolumePorod 30 nm3

SASDWL4 – Shewanella benthica hemoglobin 0.101 MPa

Group 1 truncated hemoglobin (C51S, C71S) experimental SAS data
Group 1 truncated hemoglobin (C51S, C71S) Kratky plot
Sample: Group 1 truncated hemoglobin (C51S, C71S), 13 kDa Shewanella benthica KT99 protein
Buffer: 14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment: SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18
Extremophilic hemoglobins: The structure of Shewanella benthica truncated hemoglobin N Journal of Biological Chemistry :108223 (2025)
Martinez Grundman J, Schultz T, Schlessman J, Johnson E, Gillilan R, Lecomte J
RgGuinier 2.2 nm
Dmax 7.0 nm
VolumePorod 70 nm3