Browse by ORGANISM: other species

SASDCU5 – SAXS dilution series on ground Doryteuthis squid lens 100% layer

S-crystallin, Q25367_DOROP experimental SAS data
S-crystallin, Q25367_DOROP Kratky plot
Sample: S-crystallin, Q25367_DOROP dimer, 55 kDa Doryteuthis pealeii protein
Buffer: PBS, phosphate buffered saline, pH: 7
Experiment: SAXS data collected at X9A, National Synchrotron Light Source (NSLS) on 2013 Nov 12
Eye patches: Protein assembly of index-gradient squid lenses. Science 357(6351):564-569 (2017)
Cai J, Townsend JP, Dodson TC, Heiney PA, Sweeney AM
RgGuinier 2.4 nm

SASDE73 – Unlabeled cold shock protein (CSP) with denaturant

Cold shock-like protein experimental SAS data
Cold shock-like protein Kratky plot
Sample: Cold shock-like protein monomer, 7 kDa Thermotoga maritima protein
Buffer: PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Mar 16
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements. Proc Natl Acad Sci U S A 114(31):E6342-E6351 (2017)
Fuertes G, Banterle N, Ruff KM, Chowdhury A, Mercadante D, Koehler C, Kachala M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
RgGuinier 2.5 nm
Dmax 11.5 nm
VolumePorod 17 nm3

SASDE83 – Labeled cold shock protein (CSP-Alexa488/Alexa594) with denaturant

Cold shock-like proteinAlexa Fluor™ 594 C5 MaleimideAlexa Fluor™ 488 C5 Hydroxylamine experimental SAS data
Cold shock-like protein Alexa Fluor™ 594 C5 Maleimide Alexa Fluor™ 488 C5 Hydroxylamine Kratky plot
Sample: Cold shock-like protein monomer, 7 kDa Thermotoga maritima protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer: PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Jun 15
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements. Proc Natl Acad Sci U S A 114(31):E6342-E6351 (2017)
Fuertes G, Banterle N, Ruff KM, Chowdhury A, Mercadante D, Koehler C, Kachala M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
RgGuinier 2.2 nm
Dmax 8.3 nm
VolumePorod 9 nm3

SASDCL2 – Tandem CBD from Clostridium histolyticum ColG collagenase at pCa 3

Class1 collagenase experimental SAS data
DAMMIF model
Sample: Class1 collagenase monomer, 27 kDa Hathewaya histolytica protein
Buffer: 10 mM HEPES 100 mM NaCL, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2015 Sep 14
Structural characterization of bacterial collagenases University of Arkansas PhD thesis 2431 (2017)
Bauer R
RgGuinier 2.4 nm
Dmax 7.5 nm
VolumePorod 36 nm3

SASDCM2 – Tandem CBD from Clostridium histolyticum ColG collagenase at pCa 4

Class1 collagenase collagen-binding domain experimental SAS data
DAMMIF model
Sample: Class1 collagenase collagen-binding domain monomer, 27 kDa Hathewaya histolytica protein
Buffer: 10 mM HEPES 100 mM NaCL, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2015 Sep 14
Structural characterization of bacterial collagenases University of Arkansas PhD thesis 2431 (2017)
Bauer R
RgGuinier 2.4 nm
Dmax 9.8 nm
VolumePorod 33 nm3

SASDCN2 – Tandem CBD from Clostridium histolyticum ColG collagenase at pCa 5

Class1 collagenase experimental SAS data
DAMMIF model
Sample: Class1 collagenase monomer, 27 kDa Hathewaya histolytica protein
Buffer: 10 mM HEPES 100 mM NaCL, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Sep 14
Structural characterization of bacterial collagenases University of Arkansas PhD thesis 2431 (2017)
Bauer R
RgGuinier 2.5 nm
Dmax 9.4 nm
VolumePorod 36 nm3

SASDCP2 – Tandem CBD from Clostridium histolyticum ColG collagenase at pCa 6

Class1 collagenase experimental SAS data
DAMMIF model
Sample: Class1 collagenase monomer, 27 kDa Hathewaya histolytica protein
Buffer: 10 mM HEPES 100 mM NaCL, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2015 Sep 14
Structural characterization of bacterial collagenases University of Arkansas PhD thesis 2431 (2017)
Bauer R
RgGuinier 2.6 nm
Dmax 12.8 nm
VolumePorod 33 nm3

SASDB48 – Major viral transcription factor ICP4/Immediate Early 3 DNA (ICP4N IE3_19mer) complex

Major viral transcription factor ICP4Immediate Early 3 experimental SAS data
NONE model
Sample: Major viral transcription factor ICP4 dimer, 49 kDa Human alphaherpesvirus 1 protein
Immediate Early 3 dimer, 12 kDa DNA
Buffer: 20 mM HEPES, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2015 Jul 27
The herpes viral transcription factor ICP4 forms a novel DNA recognition complex. Nucleic Acids Res 45(13):8064-8078 (2017)
Tunnicliffe RB, Lockhart-Cairns MP, Levy C, Mould AP, Jowitt TA, Sito H, Baldock C, Sandri-Goldin RM, Golovanov AP
RgGuinier 2.5 nm
Dmax 8.3 nm
VolumePorod 90 nm3

SASDB58 – Major viral transcription factor ICP4 (ICP4N dimer)

Major viral transcription factor ICP4 experimental SAS data
Major viral transcription factor ICP4 Kratky plot
Sample: Major viral transcription factor ICP4 dimer, 49 kDa Human alphaherpesvirus 1 protein
Buffer: 20 mM HEPES, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2015 Jul 27
The herpes viral transcription factor ICP4 forms a novel DNA recognition complex. Nucleic Acids Res 45(13):8064-8078 (2017)
Tunnicliffe RB, Lockhart-Cairns MP, Levy C, Mould AP, Jowitt TA, Sito H, Baldock C, Sandri-Goldin RM, Golovanov AP
RgGuinier 2.9 nm
Dmax 12.7 nm

SASDB68 – Immediate Early 3 DNA (ICP4N IE3_19mer)

Immediate Early 3 experimental SAS data
Immediate Early 3 Kratky plot
Sample: Immediate Early 3 dimer, 12 kDa DNA
Buffer: 20 mM HEPES, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2015 Nov 12
The herpes viral transcription factor ICP4 forms a novel DNA recognition complex. Nucleic Acids Res 45(13):8064-8078 (2017)
Tunnicliffe RB, Lockhart-Cairns MP, Levy C, Mould AP, Jowitt TA, Sito H, Baldock C, Sandri-Goldin RM, Golovanov AP
RgGuinier 1.9 nm
Dmax 6.9 nm