Browse by ORGANISM: other species

SASDVZ4 – ST9a RNA, PKmutant (59 nucleotides in 10 mM MgCl2; dimer)

ST9 PKmutant (59 nt RNA) experimental SAS data
ST9 PKmutant (59 nt RNA) Kratky plot
Sample: ST9 PKmutant (59 nt RNA) dimer, 38 kDa RNA
Buffer: 50 mM Tris pH 7.5, 100 mM NaCl, 1 mM DTT, 10 mM MgCl2, 0.0002% w/v NaN3, pH:
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2024 Jan 30
The pseudoknot structure of a viral RNA reveals a conserved mechanism for programmed exoribonuclease resistance
Sophie Korn
RgGuinier 3.5 nm
Dmax 12.8 nm
VolumePorod 62 nm3

SASDV25 – ST9a RNA, PKmutant (59 nucleotides in 0 mM MgCl2; monomer)

ST9 PKmutant (59 nt RNA) experimental SAS data
PYMOL model
Sample: ST9 PKmutant (59 nt RNA) monomer, 19 kDa RNA
Buffer: 50 mM Tris pH 7.5, 100 mM NaCl, 1 mM DTT, 0.0002% w/v NaN3, pH:
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2024 Jan 30
The pseudoknot structure of a viral RNA reveals a conserved mechanism for programmed exoribonuclease resistance
Sophie Korn
RgGuinier 2.5 nm
Dmax 8.8 nm
VolumePorod 29 nm3

SASDV35 – ST9a RNA, PKmutant (59 nucleotides in 0 mM MgCl2; dimer)

ST9 PKmutant (59 nt RNA) experimental SAS data
ST9 PKmutant (59 nt RNA) Kratky plot
Sample: ST9 PKmutant (59 nt RNA) dimer, 38 kDa RNA
Buffer: 50 mM Tris pH 7.5, 100 mM NaCl, 1 mM DTT, 0.0002% w/v NaN3, pH:
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2024 Jan 30
The pseudoknot structure of a viral RNA reveals a conserved mechanism for programmed exoribonuclease resistance
Sophie Korn
RgGuinier 3.8 nm
Dmax 12.5 nm
VolumePorod 73 nm3

SASDRX6 – lantibiotic dehydratase MadB (apo)

Thiopeptide-type bacteriocin biosynthesis domain containing protein experimental SAS data
GASBOR model
Sample: Thiopeptide-type bacteriocin biosynthesis domain containing protein dimer, 250 kDa Clostridium sp. Maddingley … protein
Buffer: 50 mM HEPES, 200 mM NaCl, 1 % (v/v) Glycerol, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Jun 26
Structural insights into the substrate binding mechanism of the class I dehydratase MadB Communications Biology 8(1) (2025)
Knospe C, Ortiz J, Reiners J, Kedrov A, Gertzen C, Smits S, Schmitt L
RgGuinier 4.5 nm
Dmax 13.6 nm
VolumePorod 440 nm3

SASDRY6 – lantibiotic dehydratase MadB bound to truncated maddinglicin with a full leader peptide (Leader3)

Thiopeptide-type bacteriocin biosynthesis domain containing proteinLantibiotic, gallidermin/nisin family experimental SAS data
GASBOR model
Sample: Thiopeptide-type bacteriocin biosynthesis domain containing protein dimer, 250 kDa Clostridium sp. Maddingley … protein
Lantibiotic, gallidermin/nisin family monomer, 3 kDa Clostridium sp. Maddingley … protein
Buffer: 50 mM HEPES, 200 mM NaCl, 1 % (v/v) Glycerol, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2020 Dec 3
Structural insights into the substrate binding mechanism of the class I dehydratase MadB Communications Biology 8(1) (2025)
Knospe C, Ortiz J, Reiners J, Kedrov A, Gertzen C, Smits S, Schmitt L
RgGuinier 4.5 nm
Dmax 13.8 nm
VolumePorod 445 nm3

SASDPT5 – Penicilin-Binding Protein 5 - PBP5∆1-39

Penicillin-Binding Protein 5 - PBP5∆1-39 experimental SAS data
DAMMIF model
Sample: Penicillin-Binding Protein 5 - PBP5∆1-39 monomer, 75 kDa Clostridioides difficile protein
Buffer: 100mM Tris·HCl, 150mM NaCl, 1mM EDTA, 1mM DTT, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2022 May 13
SAXS of the Penicillin-Binding Protein 5 from Clostridioides difficile
Guillem Hernandez
RgGuinier 3.8 nm
Dmax 15.0 nm
VolumePorod 109 nm3

SASDPU5 – Murine hepatitis virus (MHV) coronavirus putative packaging signal RNA

MHV coronavirus putative packaging signal RNA experimental SAS data
MHV coronavirus putative packaging signal RNA Kratky plot
Sample: MHV coronavirus putative packaging signal RNA monomer, 31 kDa Murine coronavirus RNA
Buffer: 70 mM KCl, 50 μM EDTA, 25 mM HEPES, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2021 Jun 10
MHV Coronavirus Packaging Signal RNA and N protein
Suzette Pabit
RgGuinier 3.9 nm
Dmax 12.0 nm
VolumePorod 58 nm3

SASDPV5 – Murine hepatitis virus (MHV) coronavirus putative packaging signal RNA (SEC-SAXS)

MHV coronavirus putative packaging signal RNA experimental SAS data
MHV coronavirus putative packaging signal RNA Kratky plot
Sample: MHV coronavirus putative packaging signal RNA monomer, 31 kDa Murine coronavirus RNA
Buffer: 70 mM KCl, 50 μM EDTA, 25 mM HEPES, pH: 7
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Jul 16
MHV Coronavirus Packaging Signal RNA and N protein
Suzette Pabit
RgGuinier 3.9 nm
Dmax 12.3 nm
VolumePorod 55 nm3

SASDPW5 – Murine hepatitis virus (MHV) coronavirus putative packaging signal RNA (SAXS/WAXS)

MHV coronavirus putative packaging signal RNA experimental SAS data
MHV coronavirus putative packaging signal RNA Kratky plot
Sample: MHV coronavirus putative packaging signal RNA monomer, 31 kDa Murine coronavirus RNA
Buffer: 50 mM NaCl, 50 μM EDTA, 10 mM MOPS, pH: 7
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2020 Sep 10
MHV Coronavirus Packaging Signal RNA and N protein
Suzette Pabit
RgGuinier 3.8 nm
Dmax 13.3 nm
VolumePorod 58 nm3

SASDPX5 – Murine hepatitis virus (MHV) coronavirus nucleocapsid protein N

Nucleoprotein experimental SAS data
Nucleoprotein Kratky plot
Sample: Nucleoprotein monomer, 50 kDa Murine coronavirus (strain … protein
Buffer: 70 mM KCl, 50 μM EDTA, 25 mM HEPES, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2021 Jun 10
MHV Coronavirus Packaging Signal RNA and N protein
Suzette Pabit
RgGuinier 5.1 nm
Dmax 11.9 nm
VolumePorod 91 nm3