Browse by ORGANISM: other species

SASDLD9 – 2-aminomuconic 6-semialdehyde dehydrogenase wild-type

2-aminomuconic 6-semialdehyde dehydrogenase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: 2-aminomuconic 6-semialdehyde dehydrogenase tetramer, 215 kDa Pseudomonas sp. protein
Buffer: 20 mM HEPES, 150 mM NaCl, pH: 7
Experiment: SAXS data collected at BL19U2, Shanghai Synchrotron Radiation Facility (SSRF) on 2021 Feb 1
The tetrameric assembly of 2-aminomuconic 6-semialdehyde dehydrogenase is a functional requirement of cofactor NAD(+) binding. Environ Microbiol 24(7):2994-3012 (2022)
Shi Q, Chen Y, Li X, Dong H, Chen C, Zhong Z, Yang C, Liu G, Su D
RgGuinier 3.9 nm
Dmax 11.6 nm
VolumePorod 326 nm3

SASDP43 – Accumulation-association protein (Aap) Brpt5.5 monomer

Accumulation associated protein experimental SAS data
Accumulation-association protein (Aap) Brpt5.5 monomer Rg histogram
Sample: Accumulation associated protein monomer, 78 kDa Staphylococcus epidermidis (strain … protein
Buffer: 50 mM MOPS, 50 mM NaCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Oct 16
Solution structural studies of pre-amyloid oligomer states of the biofilm protein Aap. J Mol Biol :167708 (2022)
Yarawsky AE, Hopkins JB, Chatzimagas L, Hub JS, Herr AB
RgGuinier 14.7 nm
Dmax 55.8 nm

SASDP53 – Accumulation-association protein (Aap) Brpt5.5 5xH85A monomer

Accumulation associated protein (mutant) experimental SAS data
Accumulation-association protein (Aap) Brpt5.5 5xH85A monomer Rg histogram
Sample: Accumulation associated protein (mutant) monomer, 78 kDa Staphylococcus epidermidis (strain … protein
Buffer: 50 mM MOPS, 50 mM NaCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Mar 1
Solution structural studies of pre-amyloid oligomer states of the biofilm protein Aap. J Mol Biol :167708 (2022)
Yarawsky AE, Hopkins JB, Chatzimagas L, Hub JS, Herr AB
RgGuinier 14.1 nm
Dmax 57.2 nm

SASDP63 – Accumulation-association protein (Aap) Brpt5.5 2xH85A monomer

Accumulation associated protein (mutant) experimental SAS data
Accumulation-association protein (Aap) Brpt5.5 2xH85A monomer Rg histogram
Sample: Accumulation associated protein (mutant) monomer, 78 kDa Staphylococcus epidermidis (strain … protein
Buffer: 50 mM MOPS, 50 mM NaCl, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Mar 1
Solution structural studies of pre-amyloid oligomer states of the biofilm protein Aap. J Mol Biol :167708 (2022)
Yarawsky AE, Hopkins JB, Chatzimagas L, Hub JS, Herr AB
RgGuinier 14.4 nm
Dmax 56.6 nm

SASDP73 – Accumulation-association protein (Aap) Brpt5.5 5xH85A dimer in the presence of ZnCl2

Accumulation associated protein (mutant) experimental SAS data
PYMOL model
Sample: Accumulation associated protein (mutant) dimer, 155 kDa Staphylococcus epidermidis (strain … protein
Buffer: 50 mM MOPS, 50 mM NaCl, 5 mM ZnCl2, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Mar 1
Solution structural studies of pre-amyloid oligomer states of the biofilm protein Aap. J Mol Biol :167708 (2022)
Yarawsky AE, Hopkins JB, Chatzimagas L, Hub JS, Herr AB
RgGuinier 15.0 nm
Dmax 63.3 nm

SASDP83 – Accumulation-association protein (Aap) Brpt5.5 2xH85A tetramer in the presence of ZnCl2

Accumulation associated protein (mutant) experimental SAS data
PYMOL model
Sample: Accumulation associated protein (mutant) tetramer, 312 kDa Staphylococcus epidermidis (strain … protein
Buffer: 50 mM MOPS, 50 mM NaCl, 5 mM ZnCl2, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Mar 1
Solution structural studies of pre-amyloid oligomer states of the biofilm protein Aap. J Mol Biol :167708 (2022)
Yarawsky AE, Hopkins JB, Chatzimagas L, Hub JS, Herr AB
RgGuinier 15.7 nm
Dmax 70.0 nm

SASDNE8 – apo-Pyrococcus furiosus argonaute protein at 10 °C

Piwi domain-containing protein experimental SAS data
GASBOR model
Sample: Piwi domain-containing protein monomer, 91 kDa Pyrococcus furiosus (strain … protein
Buffer: 20 mM Tris–HCl, 250 mM NaCl, 2mM DTT, pH: 8
Experiment: SAXS data collected at BL19U2, Shanghai Synchrotron Radiation Facility (SSRF) on 2021 May 7
Argonaute protein SAXS investigation
lirong zheng
RgGuinier 2.9 nm
Dmax 9.7 nm
VolumePorod 142 nm3

SASDPM2 – apo-Pyrococcus furiosus argonaute protein at 25 °C

Piwi domain-containing protein experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Piwi domain-containing protein monomer, 91 kDa Pyrococcus furiosus (strain … protein
Buffer: 20 mM Tris–HCl, 250 mM NaCl, 2mM DTT, pH: 8
Experiment: SAXS data collected at BL19U2, Shanghai Synchrotron Radiation Facility (SSRF) on 2021 May 7
Argonaute protein SAXS investigation
lirong zheng
RgGuinier 2.9 nm
Dmax 9.7 nm
VolumePorod 142 nm3

SASDPN2 – apo-Pyrococcus furiosus argonaute protein at 95 °C

Piwi domain-containing protein experimental SAS data
GASBOR model
Sample: Piwi domain-containing protein monomer, 91 kDa Pyrococcus furiosus (strain … protein
Buffer: 20 mM Tris–HCl, 250 mM NaCl, 2mM DTT, pH: 8
Experiment: SAXS data collected at BL19U2, Shanghai Synchrotron Radiation Facility (SSRF) on 2021 May 7
Argonaute protein SAXS investigation
lirong zheng
RgGuinier 3.2 nm
Dmax 9.7 nm
VolumePorod 187 nm3

SASDPP2 – apo-Pyrococcus furiosus argonaute protein with urea at 37 °C

Piwi domain-containing protein experimental SAS data
MOLECULAR DYNAMICS FRAME model
Sample: Piwi domain-containing protein monomer, 91 kDa Pyrococcus furiosus (strain … protein
Buffer: 20 mM Tris-HCl, 250 mM NaCl, 2 mM DTT, 6 M urea, pH: 8
Experiment: SAXS data collected at BL19U2, Shanghai Synchrotron Radiation Facility (SSRF) on 2021 Nov 17
Argonaute protein SAXS investigation
lirong zheng
RgGuinier 3.1 nm
Dmax 9.7 nm
VolumePorod 148 nm3