SASDMG3 – Tetrameric zinc-finger associated domain of Drosophila Pita protein

LD15650p (Pita, isoform A) experimental SAS data
OTHER model
Sample: LD15650p (Pita, isoform A) tetramer, 52 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, 100 mM NaCl, 5 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Jul 8
Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure (2022)
Bonchuk AN, Boyko KM, Nikolaeva AY, Burtseva AD, Popov VO, Georgiev PG
RgGuinier 2.4 nm
Dmax 7.6 nm
VolumePorod 62 nm3

SASDMH3 – Zinc-finger associated domain of Drosophila Pita protein L45A

LD15650p (Pita, isoform A; L45A) experimental SAS data
OTHER model
Sample: LD15650p (Pita, isoform A; L45A) dimer, 26 kDa Drosophila melanogaster protein
Buffer: 20 mM Tris, 100 mM NaCl, 5 mM DTT, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Dec 17
Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure (2022)
Bonchuk AN, Boyko KM, Nikolaeva AY, Burtseva AD, Popov VO, Georgiev PG
RgGuinier 2.3 nm
Dmax 9.5 nm
VolumePorod 35 nm3

SASDMJ3 – Zinc-finger-associated domain from Drosophila Motif 1 binding protein (M1BP)

LD30467p (Motif 1 binding protein) experimental SAS data
OTHER model
Sample: LD30467p (Motif 1 binding protein) dimer, 22 kDa Drosophila melanogaster protein
Buffer: 20 mM Bis-Tris-Propane, 100 mM NaCl, 5 mM DTT, pH: 8.5
Experiment: SAXS data collected at BM29, ESRF on 2018 Dec 17
Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure (2022)
Bonchuk AN, Boyko KM, Nikolaeva AY, Burtseva AD, Popov VO, Georgiev PG
RgGuinier 2.3 nm
Dmax 9.1 nm
VolumePorod 33 nm3

SASDND6 – Human ganglioside-induced differentiation-associated protein 1 (GDAP1) missense mutant H123R, construct GDAP1∆302-358

Ganglioside-induced differentiation-associated protein 1 (H123R) experimental SAS data
GASBOR model
Sample: Ganglioside-induced differentiation-associated protein 1 (H123R) dimer, 70 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 300 mM NaCl, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2020 Oct 8
Structural insights into Charcot-Marie-Tooth disease-linked mutations in human GDAP1. FEBS Open Bio (2022)
Sutinen A, Nguyen GTT, Raasakka A, Muruganandam G, Loris R, Ylikallio E, Tyynismaa H, Bartesaghi L, Ruskamo S, Kursula P
RgGuinier 3.1 nm
Dmax 9.9 nm
VolumePorod 107 nm3

SASDNE6 – Human ganglioside-induced differentiation-associated protein 1 (GDAP1) missense mutant R120W, construct GDAP1∆302-358

Ganglioside-induced differentiation-associated protein 1 (R120W) experimental SAS data
GASBOR model
Sample: Ganglioside-induced differentiation-associated protein 1 (R120W) dimer, 70 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 300 mM NaCl, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2020 Jul 1
Structural insights into Charcot-Marie-Tooth disease-linked mutations in human GDAP1. FEBS Open Bio (2022)
Sutinen A, Nguyen GTT, Raasakka A, Muruganandam G, Loris R, Ylikallio E, Tyynismaa H, Bartesaghi L, Ruskamo S, Kursula P
RgGuinier 3.1 nm
Dmax 10.0 nm
VolumePorod 105 nm3

SASDNK7 – Guanine-rich DNA derived from the promoter region of c-MYC gene (MYC22-G14T/G23T) with KCl

MYC22-G14T/G23T experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: MYC22-G14T/G23T monomer, 7 kDa Homo sapiens DNA
Buffer: 50 mM Tris, 30 mM KCl, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2022 Feb 27
Small-angle X-ray scattering data of a guanine-rich DNA derived from the promoter region of c-MYC gene in solution Data in Brief :108285 (2022)
Miyauchi K, Imamura H, Yamaoki Y, Kato M
RgGuinier 1.3 nm
Dmax 5.3 nm
VolumePorod 9 nm3

SASDNL7 – Guanine-rich DNA derived from the promoter region of c-MYC gene (MYC22-G14T/G23T) with 18-crown-6

MYC22-G14T/G23T experimental SAS data
MYC22-G14T/G23T Kratky plot
Sample: MYC22-G14T/G23T monomer, 7 kDa Homo sapiens DNA
Buffer: 50 mM Tris, 100 mM 18-crown-6, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2022 Feb 27
Small-angle X-ray scattering data of a guanine-rich DNA derived from the promoter region of c-MYC gene in solution Data in Brief :108285 (2022)
Miyauchi K, Imamura H, Yamaoki Y, Kato M
RgGuinier 1.6 nm
Dmax 6.0 nm
VolumePorod 10 nm3

SASDNY7 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 50 mM NaCl pH 7.0

DNA protection during starvation, DPS (Ferritin superfamily) experimental SAS data
GASBOR model
Sample: DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer: 50 mM MOPS-NaOH, 50 mM NaCl, pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22
The Conformation of the N-Terminal Tails of Deinococcus grandis Dps Is Modulated by the Ionic Strength International Journal of Molecular Sciences 23(9):4871 (2022)
Guerra J, Blanchet C, Vieira B, Almeida A, Waerenborgh J, Jones N, Hoffmann S, Tavares P, Pereira A
RgGuinier 4.4 nm
Dmax 16.1 nm
VolumePorod 409 nm3

SASDNZ7 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 80 mM NaCl pH 7.0

DNA protection during starvation, DPS (Ferritin superfamily) experimental SAS data
GASBOR model
Sample: DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer: 50 mM MOPS-NaOH, 80 mM NaCl, pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22
The Conformation of the N-Terminal Tails of Deinococcus grandis Dps Is Modulated by the Ionic Strength International Journal of Molecular Sciences 23(9):4871 (2022)
Guerra J, Blanchet C, Vieira B, Almeida A, Waerenborgh J, Jones N, Hoffmann S, Tavares P, Pereira A
RgGuinier 4.5 nm
Dmax 17.1 nm
VolumePorod 475 nm3

SASDN28 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 230 mM NaCl pH 7.0

DNA protection during starvation, DPS (Ferritin superfamily) experimental SAS data
GASBOR model
Sample: DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer: 50 mM MOPS-NaOH, 230 mM NaCl, pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22
The Conformation of the N-Terminal Tails of Deinococcus grandis Dps Is Modulated by the Ionic Strength International Journal of Molecular Sciences 23(9):4871 (2022)
Guerra J, Blanchet C, Vieira B, Almeida A, Waerenborgh J, Jones N, Hoffmann S, Tavares P, Pereira A
RgGuinier 4.5 nm
Dmax 20.6 nm
VolumePorod 438 nm3

5430 hits found.