Small Angle Scattering Biological Data Bank SASBDB

SASDKX3 – Minimal trans Varkud Satellite (VS) ribozyme without MgCl2

Neurospora Varkud Satellite minimal trans ribozyme experimental SAS data

Neurospora Varkud Satellite minimal trans ribozyme Kratky plot

Sample:	Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer:	50 mM MES, 50 mM KCl, pH: 6.5
Experiment:	SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19

An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P

R_g^Guinier	3.6	nm
D_max	12.4	nm
Volume^Porod	55	nm³

SASDKY3 – Minimal trans Varkud Satellite (VS) ribozyme in 5mM MgCl2

Sample:	Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer:	50 mM MES, 50 mM KCl, 5 mM MgCl2,, pH: 6.5
Experiment:	SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19

R_g^Guinier	3.0	nm
D_max	11.0	nm
Volume^Porod	44	nm³

SASDKZ3 – Minimal trans Varkud Satellite (VS) ribozyme in 20mM MgCl2

Sample:	Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer:	50 mM MES, 50 mM KCl, 20 mM MgCl2,, pH: 6.5
Experiment:	SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19

R_g^Guinier	3.5	nm
D_max	11.4	nm
Volume^Porod	61	nm³

SASDLS4 – Tau35, C-terminal fragment of human Tau protein

Microtubule-associated protein tau, Tau35 fragment experimental SAS data

Tau35, C-terminal fragment of human Tau protein Rg histogram

Sample:	Microtubule-associated protein tau, Tau35 fragment monomer, 27 kDa Homo sapiens protein
Buffer:	phosphate buffered saline, pH: 7.4
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 8

The Disease Associated Tau35 Fragment has an Increased Propensity to Aggregate Compared to Full-Length Tau Frontiers in Molecular Biosciences 8 (2021)
Lyu C, Da Vela S, Al-Hilaly Y, Marshall K, Thorogate R, Svergun D, Serpell L, Pastore A, Hanger D

R_g^Guinier	4.6	nm
D_max	16.2	nm
Volume^Porod	93	nm³

SASDLT4 – Tau protein, 2N3R isoform

Microtubule-associated protein tau, 2N3R isoform experimental SAS data

Sample:	Microtubule-associated protein tau, 2N3R isoform monomer, 43 kDa Homo sapiens protein
Buffer:	phosphate buffered saline, pH: 7.4
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 8

R_g^Guinier	6.3	nm
D_max	19.8	nm
Volume^Porod	211	nm³

SASDLU4 – Tau protein, 2N4R isoform

Microtubule-associated protein tau, 2N4R isoform experimental SAS data

Sample:	Microtubule-associated protein tau, 2N4R isoform monomer, 46 kDa Homo sapiens protein
Buffer:	phosphate buffered saline, pH: 7.4
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 8

R_g^Guinier	6.7	nm
D_max	23.5	nm
Volume^Porod	254	nm³

SASDJ69 – Sensory rhodopsin II - transducer complex (NpSRII/NpHtrII) in detergent at 150 mM NaCl studied with SAXS

Sensory rhodopsin II from Natronbacterium pharaonisSensory rhodopsin II transducer from Natronomonas pharaonis experimental SAS data

Sample:	Sensory rhodopsin II from Natronbacterium pharaonis dimer, 53 kDa Natronomonas pharaonis protein Sensory rhodopsin II transducer from Natronomonas pharaonis dimer, 116 kDa Natronomonas pharaonis protein
Buffer:	150 mM NaCl, 25 mM Na/Na-Pi, 1.0 mM EDTA, 0.05% DDM, pH: 8
Experiment:	SAXS data collected at BM29, ESRF on 2018 Dec 8

Ambiguities in and completeness of SAS data analysis of membrane proteins: the case of the sensory rhodopsin II–transducer complex Acta Crystallographica Section D Structural Biology 77(11) (2021)
Ryzhykau Y, Vlasov A, Orekhov P, Rulev M, Rogachev A, Vlasova A, Kazantsev A, Verteletskiy D, Skoi V, Brennich M, Pernot P, Murugova T, Gordeliy V, Kuklin A

R_g^Guinier	7.6	nm
D_max	41.0	nm

SASDJ79 – Sensory rhodopsin II - transducer complex (NpSRII/NpHtrII) in detergent at 150 mM NaCl studied with SANS

Sample:	Sensory rhodopsin II from Natronbacterium pharaonis dimer, 53 kDa Natronomonas pharaonis protein Sensory rhodopsin II transducer from Natronomonas pharaonis dimer, 116 kDa Natronomonas pharaonis protein
Buffer:	150 mM NaCl, 25 mM Na/Na-Pi, 1.0 mM EDTA, 0.05% DDM (D2O buffer), pH: 8
Experiment:	SANS data collected at YuMO SANS TOF spectrometer, IBR-2, Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research on 2019 Jan 25

R_g^Guinier	8.9	nm
D_max	39.0	nm

SASDJ89 – Sensory rhodopsin II - transducer complex (NpSRII/NpHtrII) in detergent at 1400 mM NaCl studied with SANS

Sample:	Sensory rhodopsin II from Natronbacterium pharaonis dimer, 53 kDa Natronomonas pharaonis protein Sensory rhodopsin II transducer from Natronomonas pharaonis dimer, 116 kDa Natronomonas pharaonis protein
Buffer:	1400 mM NaCl, 49.4 mM Na/Na-Pi, 1.0 mM EDTA, 0.05% DDM (D2O buffer), pH: 8
Experiment:	SANS data collected at YuMO SANS TOF spectrometer, IBR-2, Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research on 2019 Feb 10

R_g^Guinier	8.6	nm
D_max	39.0	nm

SASDJ99 – Sensory rhodopsin II - transducer complex (NpSRII/NpHtrII) in detergent at 2800 mM NaCl studied with SANS

Sample:	Sensory rhodopsin II from Natronbacterium pharaonis dimer, 53 kDa Natronomonas pharaonis protein Sensory rhodopsin II transducer from Natronomonas pharaonis dimer, 116 kDa Natronomonas pharaonis protein
Buffer:	2800 mM NaCl, 76.6 mM Na/Na-Pi, 1.0 mM EDTA, 0.05% DDM (D2O buffer), pH: 8
Experiment:	SANS data collected at YuMO SANS TOF spectrometer, IBR-2, Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research on 2019 Feb 10

R_g^Guinier	9.0	nm
D_max	39.0	nm

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