SASDJV5 – SBP12(9.b)

SBP1(9.b)SBP2(9.b) experimental SAS data
MODELLER model
Sample: SBP1(9.b) monomer, 40 kDa synthetic construct protein
SBP2(9.b) monomer, 40 kDa synthetic construct protein
Buffer: 20 mM Tris 150 mM NaCl 10% glycerol, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Jun 19
Self-assembly and regulation of protein cages from pre-organised coiled-coil modules. Nat Commun 12(1):939 (2021)
Lapenta F, Aupič J, Vezzoli M, Strmšek Ž, Da Vela S, Svergun DI, Carazo JM, Melero R, Jerala R
RgGuinier 4.0 nm
Dmax 11.8 nm

SASDJA6 – Complement C5

Complement C5 experimental SAS data
CUSTOM IN-HOUSE model
Sample: Complement C5 monomer, 186 kDa Homo sapiens protein
Buffer: 20mM Tris pH, 75mM NaCl, and 3% glycerol, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Sep 12
The allosteric modulation of Complement C5 by knob domain peptides. Elife 10 (2021)
Macpherson A, Laabei M, Ahdash Z, Graewert MA, Birtley JR, Schulze ME, Crennell S, Robinson SA, Holmes B, Oleinikovas V, Nilsson PH, Snowden J, Ellis V, Mollnes TE, Deane CM, Svergun D, Lawson AD, van...
RgGuinier 4.8 nm
Dmax 17.6 nm
VolumePorod 392 nm3

SASDKQ2 – TET12SN(2CC)

TET12(1.10)SN-f5(2CC) experimental SAS data
DAMMIF model
Sample: TET12(1.10)SN-f5(2CC) monomer, 55 kDa synthetic construct protein
Buffer: 20 mM Tris 150 mM NaCl 10% glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Dec 13
Designed folding pathway of modular coiled-coil-based proteins. Nat Commun 12(1):940 (2021)
Aupič J, Strmšek Ž, Lapenta F, Pahovnik D, Pisanski T, Drobnak I, Ljubetič A, Jerala R
RgGuinier 3.4 nm
Dmax 9.6 nm
VolumePorod 158 nm3

SASDKR2 – TET12SN(22CC)

TET12(1.10)SN-f5(22CC) experimental SAS data
DAMMIF model
Sample: TET12(1.10)SN-f5(22CC) monomer, 55 kDa synthetic construct protein
Buffer: 20 mM Tris 150 mM NaCl 10% glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Dec 5
Designed folding pathway of modular coiled-coil-based proteins. Nat Commun 12(1):940 (2021)
Aupič J, Strmšek Ž, Lapenta F, Pahovnik D, Pisanski T, Drobnak I, Ljubetič A, Jerala R
RgGuinier 3.4 nm
Dmax 10.4 nm
VolumePorod 165 nm3

SASDKS2 – TET12SN(222CC)

TET12(1.10)SN-f5(222CC) experimental SAS data
MODELLER model
Sample: TET12(1.10)SN-f5(222CC) monomer, 55 kDa synthetic construct protein
Buffer: 20 mM Tris 150 mM NaCl 10% glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Sep 15
Designed folding pathway of modular coiled-coil-based proteins. Nat Commun 12(1):940 (2021)
Aupič J, Strmšek Ž, Lapenta F, Pahovnik D, Pisanski T, Drobnak I, Ljubetič A, Jerala R
RgGuinier 3.4 nm
Dmax 10.6 nm
VolumePorod 170 nm3

SASDJ55 – S-adenosylmethionine (SAM) lyase Svi3-3

Phage-encoded SAM lyase Svi3-3 (including N-terminal His6-tag and Tev cleavage site) experimental SAS data
Phage-encoded SAM lyase Svi3-3 (including N-terminal His6-tag and Tev cleavage site) Kratky plot
Sample: Phage-encoded SAM lyase Svi3-3 (including N-terminal His6-tag and Tev cleavage site) trimer, 56 kDa Unknown environmental phage protein
Buffer: 25 mM Tris-HCl, 150 mM NaCl, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2016 Dec 9
Structure and mechanism of a phage-encoded SAM lyase revises catalytic function of enzyme family. Elife 10 (2021)
Guo X, Söderholm A, Kanchugal P S, Isaksen GV, Warsi O, Eckhard U, Trigüis S, Gogoll A, Jerlström-Hultqvist J, Åqvist J, Andersson DI, Selmer M
RgGuinier 2.5 nm
Dmax 9.3 nm
VolumePorod 85 nm3

SASDJ65 – S-adenosylmethionine (SAM) lyase Svi3-3 in presence of SAM

Phage-encoded SAM lyase Svi3-3 (including N-terminal His6-tag and Tev cleavage site) experimental SAS data
Phage-encoded SAM lyase Svi3-3 (including N-terminal His6-tag and Tev cleavage site) Kratky plot
Sample: Phage-encoded SAM lyase Svi3-3 (including N-terminal His6-tag and Tev cleavage site) trimer, 56 kDa Unknown environmental phage protein
Buffer: 25 mM Tris-HCl, 150 mM NaCl, 5 mM SAM, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2016 Dec 9
Structure and mechanism of a phage-encoded SAM lyase revises catalytic function of enzyme family. Elife 10 (2021)
Guo X, Söderholm A, Kanchugal P S, Isaksen GV, Warsi O, Eckhard U, Trigüis S, Gogoll A, Jerlström-Hultqvist J, Åqvist J, Andersson DI, Selmer M
RgGuinier 2.5 nm
Dmax 9.1 nm
VolumePorod 89 nm3

SASDJ28 – Ferric Iron Reductase - FhuF∆1-17

Ferric iron reductase protein FhuF (∆1-17) experimental SAS data
DAMFILT model
Sample: Ferric iron reductase protein FhuF (∆1-17) monomer, 28 kDa Escherichia coli (strain … protein
Buffer: 20 mM Phosphate, 200 mM NaCl, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Apr 16
Conjuring up a ghost: structural and functional characterization of FhuF, a ferric siderophore reductase from E. coli JBIC Journal of Biological Inorganic Chemistry (2021)
Trindade I, Hernandez G, Lebègue E, Barrière F, Cordeiro T, Piccioli M, Louro R
RgGuinier 2.1 nm
Dmax 8.8 nm
VolumePorod 60 nm3

SASDHQ9 – Proliferating cell nuclear antigen (PCNA) from pathogenic yeast Candida albicans

Proliferating cell nuclear antigen (C-terminal His-tagged) experimental SAS data
GASBOR model
Sample: Proliferating cell nuclear antigen (C-terminal His-tagged) trimer, 90 kDa Candida albicans protein
Buffer: 20 mM Tris-HCl (pH 7.5), 100 mM NaCl, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2018 Sep 3
Structural analyses of PCNA from the fungal pathogen Candida albicans identify three regions with species-specific conformations. FEBS Lett (2021)
Sundaram R, Manohar K, Patel SK, Acharya N, Vasudevan D
RgGuinier 3.4 nm
Dmax 10.2 nm
VolumePorod 128 nm3

SASDKK4 – A-type ATP synthase

n-Dodecyl-β-D-MaltopyranosideA-type ATP synthaseMonoclonal Antibody Fragment experimental SAS data
OTHER model
Sample: n-Dodecyl-β-D-Maltopyranoside , 77 kDa synthetic construct
A-type ATP synthase monomer, 655 kDa Thermus thermophilus protein
Monoclonal Antibody Fragment dimer, 33 kDa Homo sapiens protein
Buffer: 20 mM Tris/HCl, 100 mM sucrose, 100 mM NaCl, 2 mM MgCl2, 10% glycerol, 0.05% b-DDM, pH: 8
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2013 Mar 3
MPBuilder: A PyMOL Plugin for Building and Refinement of Solubilized Membrane Proteins Against Small Angle X-ray Scattering Data Journal of Molecular Biology :166888 (2021)
Molodenskiy D, Svergun D, Mertens H
RgGuinier 8.0 nm
Dmax 27.0 nm
VolumePorod 1549 nm3

5170 hits found.