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13 hits found for Choi

SASDQG4 – Rabies virus Nishigahara strain Phosphoprotein Isoform 3 (P3)

Isoform P3 of Phosphoprotein experimental SAS data
Rabies virus Nishigahara strain Phosphoprotein Isoform 3 (P3) Rg histogram
Sample: Isoform P3 of Phosphoprotein dimer, 55 kDa Rabies virus (strain … protein
Buffer: 25 mM HEPES, 150 mM NaCl, 1 mM TCEP, pH: 7.4
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Jun 26
Structural insights into the multifunctionality of rabies virus P3 protein. Proc Natl Acad Sci U S A 120(14):e2217066120 (2023)
...Choi YH, Yan F, Okada K, Rozario AM, Brice AM, Ito N, Williamson NA, Hatters DM, Bell TDM, Arthanari H, Moseley GW, Gooley PR
RgGuinier 3.7 nm
Dmax 16.5 nm
VolumePorod 108 nm3

SASDQH4 – Attenuated Nishigahara Phosphoprotein Isoform 3 (Ni-CE P3)

Attenuated derivative P3 of Phosphoprotein experimental SAS data
Attenuated Nishigahara Phosphoprotein Isoform 3 (Ni-CE P3) Rg histogram
Sample: Attenuated derivative P3 of Phosphoprotein dimer, 55 kDa protein
Buffer: 25 mM HEPES, 150 mM NaCl, 1 mM TCEP, pH: 7.4
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Jun 26
Structural insights into the multifunctionality of rabies virus P3 protein. Proc Natl Acad Sci U S A 120(14):e2217066120 (2023)
...Choi YH, Yan F, Okada K, Rozario AM, Brice AM, Ito N, Williamson NA, Hatters DM, Bell TDM, Arthanari H, Moseley GW, Gooley PR
RgGuinier 4.0 nm
Dmax 17.5 nm
VolumePorod 127 nm3

SASDHJ4 – Dengue Virus 2 New Guinea C (DENV-2 C, capsid protein), apo form

Dengue Virus 2 New Guinea C experimental SAS data
CORAL model
Sample: Dengue Virus 2 New Guinea C dimer, 19 kDa Dengue virus 2 protein
Buffer: 100 mM NaCl, 25 mM HEPES, pH: 7.4
Experiment: SAXS data collected at Rigaku BioSAXS-1000, Sealy Center For Structural Biology, UTMB-G on 2018 Jul 5
A cocrystal structure of dengue capsid protein in complex of inhibitor. Proc Natl Acad Sci U S A 117(30):17992-18001 (2020)
...Choi KH, White MA, Shi PY
RgGuinier 1.8 nm
Dmax 5.4 nm
VolumePorod 52 nm3

SASDQJ4 – N226H Nishigahara Phosphoprotein Isoform 3 (N226H_P3)

Isoform P3 of Phosphoprotein Nish P3 N226H experimental SAS data
N226H Nishigahara Phosphoprotein Isoform 3 (N226H_P3) Rg histogram
Sample: Isoform P3 of Phosphoprotein Nish P3 N226H dimer, 55 kDa protein
Buffer: 25 mM HEPES, 150 mM NaCl, 1 mM TCEP, pH: 7.4
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Jun 26
Structural insights into the multifunctionality of rabies virus P3 protein. Proc Natl Acad Sci U S A 120(14):e2217066120 (2023)
...Choi YH, Yan F, Okada K, Rozario AM, Brice AM, Ito N, Williamson NA, Hatters DM, Bell TDM, Arthanari H, Moseley GW, Gooley PR
RgGuinier 4.3 nm
Dmax 19.0 nm
VolumePorod 150 nm3

SASDHK4 – Dengue Virus 2 New Guinea C (DENV-2 C, capsid protein) with saturating ST148 inhibitor

Dengue Virus 2 New Guinea C experimental SAS data
CORAL model
Sample: Dengue Virus 2 New Guinea C dimer, 19 kDa Dengue virus 2 protein
Buffer: 100 mM NaCl, 25 mM HEPES, pH 7.4, 10 µM ST148, pH: 7.4
Experiment: SAXS data collected at Rigaku BioSAXS-1000, Sealy Center For Structural Biology, UTMB-G on 2018 Jul 26
A cocrystal structure of dengue capsid protein in complex of inhibitor. Proc Natl Acad Sci U S A 117(30):17992-18001 (2020)
...Choi KH, White MA, Shi PY
RgGuinier 1.9 nm
Dmax 6.0 nm
VolumePorod 52 nm3

SASDV55 – The dark-adapted AsLOV2 domain (Avena sativa, Oat)

non-specific serine/threonine protein kinase experimental SAS data
non-specific serine/threonine protein kinase Kratky plot
Sample: non-specific serine/threonine protein kinase monomer, 17 kDa Avena sativa protein
Buffer: 20 mM Tris, 200 mM NaCl, pH: 7
Experiment: SAXS data collected at 4C, Pohang Accelerator Laboratory on 2021 May 15
Structural dynamics of protein-protein association involved in the light-induced transition of Avena sativa LOV2 protein. Nat Commun 15(1):6991 (2024)
...Choi J, Kim JG, Kim TW, You S, Kosheleva I, Noh T, Baek J, Ihee H
RgGuinier 1.8 nm
Dmax 6.6 nm
VolumePorod 21 nm3

SASDV65 – The light-adapted AsLOV2 domain (Avena sativa, Oat)

non-specific serine/threonine protein kinase experimental SAS data
non-specific serine/threonine protein kinase Kratky plot
Sample: non-specific serine/threonine protein kinase dimer, 33 kDa Avena sativa protein
Buffer: 20 mM Tris, 200 mM NaCl, pH: 7
Experiment: SAXS data collected at 4C, Pohang Accelerator Laboratory on 2021 May 15
Structural dynamics of protein-protein association involved in the light-induced transition of Avena sativa LOV2 protein. Nat Commun 15(1):6991 (2024)
...Choi J, Kim JG, Kim TW, You S, Kosheleva I, Noh T, Baek J, Ihee H
RgGuinier 2.3 nm
Dmax 8.5 nm
VolumePorod 51 nm3

SASDCM6 – Small GTPase Rab5 conjugated with ubiquitin at K116

Monoubiquitinated Rab5 at K165 experimental SAS data
Small GTPase Rab5 conjugated with ubiquitin at K116 Rg histogram
Sample: Monoubiquitinated Rab5 at K165 monomer, 32 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, pH: 7.5
Experiment: SAXS data collected at 4C, Pohang Accelerator Laboratory on 2016 Nov 21
Site-specific monoubiquitination downregulates Rab5 by disrupting effector binding and guanine nucleotide conversion. Elife 6 (2017)
...Choi CY, Lee S
RgGuinier 2.6 nm
Dmax 8.7 nm

SASDCN6 – Small GTPase Rab5 conjugated with ubiquitin at K140

Monoubiquitinated Rab5 at K165 experimental SAS data
Small GTPase Rab5 conjugated with ubiquitin at K140 Rg histogram
Sample: Monoubiquitinated Rab5 at K165 monomer, 32 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, pH: 7.5
Experiment: SAXS data collected at 4C, Pohang Accelerator Laboratory on 2016 Nov 21
Site-specific monoubiquitination downregulates Rab5 by disrupting effector binding and guanine nucleotide conversion. Elife 6 (2017)
...Choi CY, Lee S
RgGuinier 2.3 nm
Dmax 8.4 nm

SASDCP6 – Small GTPase Rab5 conjugated with ubiquitin at K165

Monoubiquitinated Rab5 at K165 experimental SAS data
Small GTPase Rab5 conjugated with ubiquitin at K165 Rg histogram
Sample: Monoubiquitinated Rab5 at K165 monomer, 32 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, pH: 7.5
Experiment: SAXS data collected at 4C, Pohang Accelerator Laboratory on 2016 Nov 21
Site-specific monoubiquitination downregulates Rab5 by disrupting effector binding and guanine nucleotide conversion. Elife 6 (2017)
...Choi CY, Lee S
RgGuinier 2.7 nm
Dmax 9.4 nm

SASDV33 – N-terminal domain construct of hsGEFH1_190-582aa fit to DAMMIF and Alphafold2 models

Isoform 1 of Rho guanine nucleotide exchange factor 2 experimental SAS data
ALPHAFOLD model
Sample: Isoform 1 of Rho guanine nucleotide exchange factor 2 monomer, 47 kDa Homo sapiens protein
Buffer: 20mM Tris-Cl, 150mM NaCl, 1mM DTT, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2021 Feb 19
Structural basis of microtubule-mediated signal transduction. Cell (2025)
Choi SR, Blum TB, Giono M, Roy B, Vakonakis I, Schmid D, Oelgarth N, Ranganathan A, Gossert AD, Shivashankar GV, Zippelius A, Steinmetz MO
RgGuinier 5.9 nm

SASDV43 – N-terminal domain construct of hsGEFH1_28-582aa fit to DAMMIF model and EOM

Isoform 1 of Rho guanine nucleotide exchange factor 2 experimental SAS data
N-terminal domain construct of hsGEFH1_28-582aa fit to DAMMIF model and EOM Rg histogram
Sample: Isoform 1 of Rho guanine nucleotide exchange factor 2 monomer, 64 kDa Homo sapiens protein
Buffer: 20mM Tris-Cl, 150mM NaCl, 1mM DTT, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2021 Feb 19
Structural basis of microtubule-mediated signal transduction. Cell (2025)
Choi SR, Blum TB, Giono M, Roy B, Vakonakis I, Schmid D, Oelgarth N, Ranganathan A, Gossert AD, Shivashankar GV, Zippelius A, Steinmetz MO
RgGuinier 3.7 nm

SASDV23 – N-terminal domain construct of hsGEFH1_28-582aa fit to various models

Isoform 1 of Rho guanine nucleotide exchange factor 2 experimental SAS data
MODELLER model
Sample: Isoform 1 of Rho guanine nucleotide exchange factor 2 monomer, 64 kDa Homo sapiens protein
Buffer: 20mM Tris-Cl, 150mM NaCl, 1mM DTT, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2021 Feb 19
Structural basis of microtubule-mediated signal transduction. Cell (2025)
Choi SR, Blum TB, Giono M, Roy B, Vakonakis I, Schmid D, Oelgarth N, Ranganathan A, Gossert AD, Shivashankar GV, Zippelius A, Steinmetz MO
RgGuinier 3.7 nm