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20 hits found for Plumridge

SASDCD4 – Truncated P5abc subdomain from tetrahymena ribozyme: Time-resolved 1000ms

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 10mM KMOPS 20mM KCl 1mM MgCl2 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Dec 3
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.2 nm
Dmax 6.8 nm

SASDB29 – Single stranded poly-deoxyadenosine DNA (30mer, dA30) in 200 mM NaCl

Poly-deoxyadenosine (30mer) experimental SAS data
CUSTOM IN-HOUSE model
Sample: Poly-deoxyadenosine (30mer) monomer, DNA
Buffer: 1mM Na MOPS, 200mM NaCl, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2015 Apr 1
The impact of base stacking on the conformations and electrostatics of single-stranded DNA. Nucleic Acids Res 45(7):3932-3943 (2017)
Plumridge A, Meisburger SP, Andresen K, Pollack L
RgGuinier 2.7 nm
Dmax 9.5 nm
VolumePorod 15 nm3

SASDB39 – Single stranded poly-deoxythymidine DNA (30mer, dT30) in 100 mM NaCl

Poly-deoxythymidine (30mer) experimental SAS data
CUSTOM IN-HOUSE model
Sample: Poly-deoxythymidine (30mer) monomer, DNA
Buffer: 1mM Na MOPS, 100mM NaCl, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2015 Apr 1
The impact of base stacking on the conformations and electrostatics of single-stranded DNA. Nucleic Acids Res 45(7):3932-3943 (2017)
Plumridge A, Meisburger SP, Andresen K, Pollack L
RgGuinier 2.8 nm

SASDB49 – Single stranded poly-deoxythymidine DNA (30mer, dT30) in 200 mM NaCl

Poly-deoxythymidine (30mer) experimental SAS data
CUSTOM IN-HOUSE model
Sample: Poly-deoxythymidine (30mer) monomer, DNA
Buffer: 1mM Na MOPS, 200mM NaCl, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2015 Apr 1
The impact of base stacking on the conformations and electrostatics of single-stranded DNA. Nucleic Acids Res 45(7):3932-3943 (2017)
Plumridge A, Meisburger SP, Andresen K, Pollack L
RgGuinier 2.7 nm

SASDC74 – Truncated P5abc subdomain from tetrahymena ribozyme: Time-resolved 0ms

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 10mM KMOPS 20mM KCl 1mM MgCl2 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Dec 3
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.5 nm
Dmax 8.0 nm

SASDC94 – Truncated P5abc subdomain from tetrahymena ribozyme: Time-resolved 10ms

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 10mM KMOPS 20mM KCl 1mM MgCl2 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Dec 3
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.3 nm
Dmax 7.2 nm

SASDCA4 – Truncated P5abc subdomain from tetrahymena ribozyme: Time-resolved 30ms

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 10mM KMOPS 20mM KCl 1mM MgCl2 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Dec 3
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.2 nm
Dmax 7.0 nm

SASDCB4 – Truncated P5abc subdomain from tetrahymena ribozyme: Time-resolved 100ms

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 10mM KMOPS 20mM KCl 1mM MgCl2 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Dec 3
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.3 nm
Dmax 7.1 nm

SASDCC4 – Truncated P5abc subdomain from tetrahymena ribozyme: Time-resolved 300ms

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 10mM KMOPS 20mM KCl 1mM MgCl2 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Dec 3
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.2 nm
Dmax 6.8 nm

SASDBD6 – Single stranded poly-deoxythymidine DNA (30mer, dT30)

Poly-deoxythymidine (30mer) experimental SAS data
Single stranded poly-deoxythymidine DNA (30mer, dT30) Rg histogram
Sample: Poly-deoxythymidine (30mer) monomer, DNA
Buffer: 1mM Na MOPS, 20mM NaCl, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Apr 1
Visualizing single-stranded nucleic acids in solution. Nucleic Acids Res 45(9):e66 (2017)
Plumridge A, Meisburger SP, Pollack L
RgGuinier 3.0 nm
Dmax 10.7 nm

SASDBE6 – Single stranded poly-deoxyadenosine DNA (30mer, dA30)

Poly-deoxyadenosine (30mer) experimental SAS data
Single stranded poly-deoxyadenosine DNA (30mer, dA30) Rg histogram
Sample: Poly-deoxyadenosine (30mer) monomer, DNA
Buffer: 1mM Na MOPS, 20mM NaCl, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2015 Apr 1
Visualizing single-stranded nucleic acids in solution. Nucleic Acids Res 45(9):e66 (2017)
Plumridge A, Meisburger SP, Pollack L
RgGuinier 2.7 nm
Dmax 9.5 nm

SASDCF4 – Truncated P5abc subdomain from tetrahymena ribozyme: Static 20mM KCl

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 20mM KCl 10mM KMOPS 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Jun 17
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.6 nm
Dmax 8.5 nm

SASDCE4 – Truncated P5abc subdomain from tetrahymena ribozyme: Time-resolved 3000ms

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 10mM KMOPS 20mM KCl 1mM MgCl2 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Dec 3
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.2 nm
Dmax 6.7 nm

SASDCH4 – Truncated P5abc subdomain from tetrahymena ribozyme: Static 200mm KCl

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 200mM KCl 10mM KMOPS 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Jun 17
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.5 nm
Dmax 8.0 nm

SASDCJ4 – Truncated P5abc subdomain from tetrahymena ribozyme: Static 400mM KCl

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 400mM KCl 10mM KMOPS 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Jun 17
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.4 nm
Dmax 8.0 nm

SASDCK4 – Truncated P5abc subdomain from tetrahymena ribozyme: Static 0.25mM MgCl2

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 20mM KCl 0.25mM MgCl2 10mM KMOPS 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Jun 17
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.4 nm
Dmax 7.6 nm

SASDCL4 – Truncated P5abc subdomain from tetrahymena ribozyme: Static 0.50mM MgCl2

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 0.5mM MgCl2 20mM KCl 10mM KMOPS 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Jun 17
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.3 nm
Dmax 7.2 nm

SASDCM4 – Truncated P5abc subdomain from tetrahymena ribozyme: Static 1mM MgCl2

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 1mM MgCl2 20mM KCl 10mM KMOPS 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Jun 17
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.2 nm
Dmax 7.2 nm

SASDBZ8 – Single stranded poly-deoxyadenosine DNA (30mer, dA30) in 100 mM NaCl

Poly-deoxyadenosine (30mer) experimental SAS data
CUSTOM IN-HOUSE model
Sample: Poly-deoxyadenosine (30mer) monomer, DNA
Buffer: 1mM Na MOPS, 100mM NaCl, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2015 Apr 1
The impact of base stacking on the conformations and electrostatics of single-stranded DNA. Nucleic Acids Res 45(7):3932-3943 (2017)
Plumridge A, Meisburger SP, Andresen K, Pollack L
RgGuinier 2.7 nm
Dmax 10.0 nm
VolumePorod 16 nm3

SASDCG4 – Truncated P5abc subdomain from tetrahymena ribozyme: Static 100mM KCl

Truncated P5abc subdomain from tetrahymena ribozyme experimental SAS data
Truncated P5abc subdomain from tetrahymena ribozyme Kratky plot
Sample: Truncated P5abc subdomain from tetrahymena ribozyme monomer, RNA
Buffer: 100mM KCl 10mM KMOPS 20uM EDTA, pH: 7
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2016 Jun 17
Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Res 46(14):7354-7365 (2018)
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L
RgGuinier 2.5 nm
Dmax 8.0 nm